Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Species'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
abbreviation 1 TEXT N/A Species   TEXT
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier Taxon   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A Taxon   varchar(255)
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
superTaxon 1 INSTANCE Taxon Taxon   INTEGER(10) UNSIGNED

Referers of class 'Species' instances
Class name Attribute name Cardinality
Event species +
Pathway species +
Polymerisation species +
CandidateSet species +
ReferenceSequence species 1
GenomeEncodedEntity species 1
ReferenceIsoform species 1
ReferenceRNASequence species 1
ReferenceGeneProduct species 1
CellLineagePath species +
Complex species +
Cell species +
_DeletedInstance species +
SimpleEntity species 1
InteractionEvent species +
ReactionlikeEvent species +
FailedReaction species +
CellDevelopmentStep species +
EntitySet species +
Polymer species +
BlackBoxEvent species +
EntityWithAccessionedSequence species 1
Reaction species +
Depolymerisation species +
DefinedSet species +
ReferenceDNASequence species 1
_Deleted replacementInstances +
Taxon superTaxon 1
Species superTaxon 1
Polymerisation relatedSpecies +
EntitySet relatedSpecies +
CandidateSet relatedSpecies +
FailedReaction relatedSpecies +
CellDevelopmentStep relatedSpecies +
Event relatedSpecies +
Pathway relatedSpecies +
ReactionlikeEvent relatedSpecies +
InteractionEvent relatedSpecies +
Depolymerisation relatedSpecies +
Reaction relatedSpecies +
Complex relatedSpecies +
CellLineagePath relatedSpecies +
DefinedSet relatedSpecies +
BlackBoxEvent relatedSpecies +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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