Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
BlackBoxEvent structureModified +
FailedReaction structureModified +
CellDevelopmentStep structureModified +
Depolymerisation structureModified +
Reaction structureModified +
Pathway structureModified +
Event structureModified +
Polymerisation structureModified +
CellLineagePath structureModified +
InteractionEvent structureModified +
ReactionlikeEvent structureModified +
ReferenceDatabase created 1
Disease created 1
FragmentModification created 1
RNADrug created 1
SequenceOntology created 1
Person created 1
ReferenceTherapeutic created 1
_DeletedInstance created 1
FunctionalStatus created 1
ReferenceDNASequence created 1
NegativeGeneExpressionRegulation created 1
Drug created 1
IntraChainCrosslinkedResidue created 1
ChemicalDrug created 1
ModifiedNucleotide created 1
ControlledVocabulary created 1
PsiMod created 1
ReviewStatus created 1
EntityWithAccessionedSequence created 1
ReferenceGroup created 1
Complex created 1
EntitySet created 1
InteractionEvent created 1
StableIdentifierHistory created 1
ReferenceRNASequence created 1
_Deleted created 1
ReferenceSequence created 1
_UpdateTracker created 1
SimpleEntity created 1
ReactionlikeEvent created 1
Requirement created 1
TranslationalModification created 1
Polymerisation created 1
FragmentDeletionModification created 1
PhysicalEntity created 1
NonsenseMutation created 1
CellLineagePath created 1
Cell created 1
Species created 1
EvidenceType created 1
Pathway created 1
CatalystActivity created 1
ReferenceEntity created 1
Compartment created 1
DatabaseIdentifier created 1
Taxon created 1
StableIdentifier created 1
GO_BiologicalProcess created 1
Summation created 1
FunctionalStatusType created 1
FragmentReplacedModification created 1
ControlReference created 1
PositiveRegulation created 1
Reaction created 1
ProteinDrug created 1
TranscriptionalModification created 1
CrosslinkedResidue created 1
FailedReaction created 1
GroupModifiedResidue created 1
MarkerReference created 1
ReferenceMolecule created 1
DrugActionType created 1
FragmentInsertionModification created 1
NegativePrecedingEvent created 1
BlackBoxEvent created 1
Affiliation created 1
EntityFunctionalStatus created 1
InstanceEdit created 1
LiteratureReference created 1
CatalystActivityReference created 1
ReferenceGeneProduct created 1
DatabaseObject created 1
Event created 1
NegativePrecedingEventReason created 1
GO_CellularComponent created 1
RegulationReference created 1
AbstractModifiedResidue created 1
NegativeRegulation created 1
CandidateSet created 1
Regulation created 1
ExternalOntology created 1
InterChainCrosslinkedResidue created 1
StableIdentifierReleaseStatus created 1
ReactionType created 1
ReferenceIsoform created 1
Depolymerisation created 1
ModifiedResidue created 1
DefinedSet created 1
Polymer created 1
GenomeEncodedEntity created 1
Figure created 1
URL created 1
_Release created 1
Book created 1
CellDevelopmentStep created 1
DeletedControlledVocabulary created 1
PathwayDiagram created 1
ReplacedResidue created 1
PositiveGeneExpressionRegulation created 1
GeneticallyModifiedResidue created 1
FrontPage created 1
CellType created 1
GO_MolecularFunction created 1
Publication created 1
Anatomy created 1
OtherEntity created 1
_Deleted replacementInstances +
EntitySet edited +
Event edited +
InteractionEvent edited +
EntityWithAccessionedSequence edited +
Complex edited +
ProteinDrug edited +
FailedReaction edited +
CandidateSet edited +
OtherEntity edited +
Reaction edited +
Polymerisation edited +
PhysicalEntity edited +
CellLineagePath edited +
Cell edited +
SimpleEntity edited +
ReactionlikeEvent edited +
RNADrug edited +
BlackBoxEvent edited +
CellDevelopmentStep edited +
Depolymerisation edited +
Drug edited +
ChemicalDrug edited +
DefinedSet edited +
Pathway edited +
Polymer edited +
GenomeEncodedEntity edited +
Pathway internalReviewed +
Reaction internalReviewed +
Depolymerisation internalReviewed +
CellDevelopmentStep internalReviewed +
FailedReaction internalReviewed +
BlackBoxEvent internalReviewed +
ReactionlikeEvent internalReviewed +
InteractionEvent internalReviewed +
CellLineagePath internalReviewed +
Polymerisation internalReviewed +
Event internalReviewed +
Reaction revised +
ProteinDrug revised +
CandidateSet revised +
FailedReaction revised +
OtherEntity revised +
EntityWithAccessionedSequence revised +
Complex revised +
EntitySet revised +
Event revised +
InteractionEvent revised +
Depolymerisation revised +
ChemicalDrug revised +
Drug revised +
DefinedSet revised +
Pathway revised +
GenomeEncodedEntity revised +
Polymer revised +
BlackBoxEvent revised +
CellDevelopmentStep revised +
SimpleEntity revised +
ReactionlikeEvent revised +
RNADrug revised +
Polymerisation revised +
PhysicalEntity revised +
Cell revised +
CellLineagePath revised +
ReferenceGroup modified +
ReviewStatus modified +
EntityWithAccessionedSequence modified +
Complex modified +
EntitySet modified +
StableIdentifierHistory modified +
InteractionEvent modified +
_Deleted modified +
ReferenceRNASequence modified +
ReferenceSequence modified +
Disease modified +
ReferenceDatabase modified +
RNADrug modified +
FragmentModification modified +
SequenceOntology modified +
Person modified +
ReferenceTherapeutic modified +
NegativeGeneExpressionRegulation modified +
Drug modified +
ReferenceDNASequence modified +
FunctionalStatus modified +
ChemicalDrug modified +
IntraChainCrosslinkedResidue modified +
_DeletedInstance modified +
ModifiedNucleotide modified +
ControlledVocabulary modified +
PsiMod modified +
Summation modified +
GO_BiologicalProcess modified +
FunctionalStatusType modified +
ControlReference modified +
FragmentReplacedModification modified +
PositiveRegulation modified +
Reaction modified +
CrosslinkedResidue modified +
TranscriptionalModification modified +
ProteinDrug modified +
FailedReaction modified +
SimpleEntity modified +
_UpdateTracker modified +
TranslationalModification modified +
ReactionlikeEvent modified +
Requirement modified +
FragmentDeletionModification modified +
Polymerisation modified +
Species modified +
Cell modified +
CellLineagePath modified +
PhysicalEntity modified +
NonsenseMutation modified +
EvidenceType modified +
DatabaseIdentifier modified +
Compartment modified +
ReferenceEntity modified +
Pathway modified +
CatalystActivity modified +
StableIdentifier modified +
Taxon modified +
DatabaseObject modified +
ReferenceGeneProduct modified +
Event modified +
GO_CellularComponent modified +
NegativePrecedingEventReason modified +
RegulationReference modified +
AbstractModifiedResidue modified +
NegativeRegulation modified +
CandidateSet modified +
Regulation modified +
GroupModifiedResidue modified +
MarkerReference modified +
DrugActionType modified +
ReferenceMolecule modified +
FragmentInsertionModification modified +
NegativePrecedingEvent modified +
InstanceEdit modified +
EntityFunctionalStatus modified +
Affiliation modified +
BlackBoxEvent modified +
CatalystActivityReference modified +
LiteratureReference modified +
PathwayDiagram modified +
ReplacedResidue modified +
PositiveGeneExpressionRegulation modified +
GeneticallyModifiedResidue modified +
FrontPage modified +
CellType modified +
GO_MolecularFunction modified +
OtherEntity modified +
Anatomy modified +
Publication modified +
InterChainCrosslinkedResidue modified +
ExternalOntology modified +
StableIdentifierReleaseStatus modified +
ReactionType modified +
ReferenceIsoform modified +
Depolymerisation modified +
GenomeEncodedEntity modified +
Polymer modified +
Figure modified +
DefinedSet modified +
ModifiedResidue modified +
URL modified +
DeletedControlledVocabulary modified +
_Release modified +
CellDevelopmentStep modified +
Book modified +
ProteinDrug reviewed +
FailedReaction reviewed +
CandidateSet reviewed +
OtherEntity reviewed +
Reaction reviewed +
Event reviewed +
EntitySet reviewed +
InteractionEvent reviewed +
EntityWithAccessionedSequence reviewed +
Complex reviewed +
BlackBoxEvent reviewed +
CellDevelopmentStep reviewed +
Depolymerisation reviewed +
ChemicalDrug reviewed +
Drug reviewed +
DefinedSet reviewed +
Pathway reviewed +
Polymer reviewed +
GenomeEncodedEntity reviewed +
Polymerisation reviewed +
PhysicalEntity reviewed +
Cell reviewed +
CellLineagePath reviewed +
SimpleEntity reviewed +
ReactionlikeEvent reviewed +
RNADrug reviewed +
OtherEntity authored 1
FailedReaction authored +
CandidateSet authored 1
ProteinDrug authored 1
Reaction authored +
InteractionEvent authored +
EntitySet authored 1
Event authored +
Complex authored 1
EntityWithAccessionedSequence authored 1
CellDevelopmentStep authored +
BlackBoxEvent authored +
GenomeEncodedEntity authored 1
Polymer authored 1
DefinedSet authored 1
Pathway authored +
Drug authored 1
ChemicalDrug authored 1
Depolymerisation authored +
Cell authored 1
CellLineagePath authored +
PhysicalEntity authored 1
Polymerisation authored +
RNADrug authored 1
ReactionlikeEvent authored +
SimpleEntity authored 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.