Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
Depolymerisation created 1
Disease created 1
SequenceOntology created 1
ControlReference created 1
FunctionalStatus created 1
Compartment created 1
Polymerisation created 1
Drug created 1
InteractionEvent created 1
Complex created 1
URL created 1
EvidenceType created 1
SimpleEntity created 1
ReferenceRNASequence created 1
PositiveGeneExpressionRegulation created 1
ExternalOntology created 1
CellDevelopmentStep created 1
CandidateSet created 1
NegativePrecedingEventReason created 1
OtherEntity created 1
BlackBoxEvent created 1
GenomeEncodedEntity created 1
Reaction created 1
EntitySet created 1
NegativePrecedingEvent created 1
StableIdentifier created 1
Regulation created 1
ReferenceDNASequence created 1
GO_MolecularFunction created 1
Summation created 1
GO_BiologicalProcess created 1
ReferenceTherapeutic created 1
IntraChainCrosslinkedResidue created 1
ProteinDrug created 1
_DeletedInstance created 1
FragmentReplacedModification created 1
RegulationReference created 1
DrugActionType created 1
PathwayDiagram created 1
FailedReaction created 1
DatabaseObject created 1
ChemicalDrug created 1
ReferenceEntity created 1
Pathway created 1
CellType created 1
ReviewStatus created 1
FragmentInsertionModification created 1
Taxon created 1
ReplacedResidue created 1
ModifiedNucleotide created 1
EntityWithAccessionedSequence created 1
StableIdentifierReleaseStatus created 1
ReferenceDatabase created 1
Figure created 1
GO_CellularComponent created 1
ReferenceGeneProduct created 1
InstanceEdit created 1
Publication created 1
PsiMod created 1
PositiveRegulation created 1
Cell created 1
PhysicalEntity created 1
Book created 1
_Deleted created 1
CellLineagePath created 1
TranscriptionalModification created 1
Affiliation created 1
ReferenceGroup created 1
DatabaseIdentifier created 1
GeneticallyModifiedResidue created 1
_UpdateTracker created 1
EntityFunctionalStatus created 1
ReactionType created 1
DefinedSet created 1
InterChainCrosslinkedResidue created 1
ControlledVocabulary created 1
Species created 1
CrosslinkedResidue created 1
Anatomy created 1
NonsenseMutation created 1
Event created 1
ReferenceSequence created 1
_Release created 1
StableIdentifierHistory created 1
LiteratureReference created 1
ReactionlikeEvent created 1
DeletedControlledVocabulary created 1
FrontPage created 1
CatalystActivity created 1
Person created 1
Requirement created 1
CatalystActivityReference created 1
ModifiedResidue created 1
FunctionalStatusType created 1
GroupModifiedResidue created 1
RNADrug created 1
FragmentModification created 1
AbstractModifiedResidue created 1
NegativeGeneExpressionRegulation created 1
Polymer created 1
ReferenceMolecule created 1
MarkerReference created 1
FragmentDeletionModification created 1
NegativeRegulation created 1
ReferenceIsoform created 1
TranslationalModification created 1
Polymer edited +
EntitySet edited +
DefinedSet edited +
PhysicalEntity edited +
Cell edited +
CandidateSet edited +
CellDevelopmentStep edited +
Reaction edited +
GenomeEncodedEntity edited +
RNADrug edited +
BlackBoxEvent edited +
OtherEntity edited +
EntityWithAccessionedSequence edited +
Complex edited +
InteractionEvent edited +
Drug edited +
ChemicalDrug edited +
FailedReaction edited +
SimpleEntity edited +
Pathway edited +
Event edited +
CellLineagePath edited +
Depolymerisation edited +
Polymerisation edited +
ReactionlikeEvent edited +
ProteinDrug edited +
Pathway structureModified +
InteractionEvent structureModified +
FailedReaction structureModified +
ReactionlikeEvent structureModified +
Reaction structureModified +
Polymerisation structureModified +
BlackBoxEvent structureModified +
CellLineagePath structureModified +
Event structureModified +
Depolymerisation structureModified +
CellDevelopmentStep structureModified +
BlackBoxEvent authored +
RNADrug authored 1
EntityWithAccessionedSequence authored 1
OtherEntity authored 1
Reaction authored +
GenomeEncodedEntity authored 1
CandidateSet authored 1
CellDevelopmentStep authored +
PhysicalEntity authored 1
Cell authored 1
Polymer authored 1
EntitySet authored 1
DefinedSet authored 1
ProteinDrug authored 1
Polymerisation authored +
ReactionlikeEvent authored +
Depolymerisation authored +
Event authored +
CellLineagePath authored +
Pathway authored +
SimpleEntity authored 1
ChemicalDrug authored 1
FailedReaction authored +
Complex authored 1
Drug authored 1
InteractionEvent authored +
SimpleEntity reviewed +
Pathway reviewed +
Complex reviewed +
Drug reviewed +
InteractionEvent reviewed +
FailedReaction reviewed +
ChemicalDrug reviewed +
Polymerisation reviewed +
ReactionlikeEvent reviewed +
ProteinDrug reviewed +
Event reviewed +
CellLineagePath reviewed +
Depolymerisation reviewed +
PhysicalEntity reviewed +
Cell reviewed +
Polymer reviewed +
EntitySet reviewed +
DefinedSet reviewed +
Reaction reviewed +
GenomeEncodedEntity reviewed +
BlackBoxEvent reviewed +
RNADrug reviewed +
EntityWithAccessionedSequence reviewed +
OtherEntity reviewed +
CandidateSet reviewed +
CellDevelopmentStep reviewed +
_Deleted replacementInstances +
CellLineagePath internalReviewed +
Event internalReviewed +
CellDevelopmentStep internalReviewed +
Depolymerisation internalReviewed +
Reaction internalReviewed +
Polymerisation internalReviewed +
ReactionlikeEvent internalReviewed +
BlackBoxEvent internalReviewed +
InteractionEvent internalReviewed +
FailedReaction internalReviewed +
Pathway internalReviewed +
ReactionlikeEvent modified +
_Release modified +
LiteratureReference modified +
StableIdentifierHistory modified +
ReferenceSequence modified +
Event modified +
CrosslinkedResidue modified +
Anatomy modified +
NonsenseMutation modified +
CatalystActivityReference modified +
Requirement modified +
Person modified +
CatalystActivity modified +
FrontPage modified +
DeletedControlledVocabulary modified +
FragmentModification modified +
AbstractModifiedResidue modified +
RNADrug modified +
ModifiedResidue modified +
GroupModifiedResidue modified +
FunctionalStatusType modified +
ReferenceIsoform modified +
TranslationalModification modified +
FragmentDeletionModification modified +
NegativeRegulation modified +
MarkerReference modified +
ReferenceMolecule modified +
NegativeGeneExpressionRegulation modified +
Polymer modified +
Affiliation modified +
ReferenceGroup modified +
TranscriptionalModification modified +
_Deleted modified +
CellLineagePath modified +
Book modified +
_UpdateTracker modified +
EntityFunctionalStatus modified +
GeneticallyModifiedResidue modified +
DatabaseIdentifier modified +
ReactionType modified +
Species modified +
DefinedSet modified +
ControlledVocabulary modified +
InterChainCrosslinkedResidue modified +
FragmentReplacedModification modified +
_DeletedInstance modified +
RegulationReference modified +
ReferenceTherapeutic modified +
IntraChainCrosslinkedResidue modified +
GO_BiologicalProcess modified +
ProteinDrug modified +
CellType modified +
ReviewStatus modified +
Pathway modified +
ReferenceEntity modified +
PathwayDiagram modified +
DrugActionType modified +
FailedReaction modified +
DatabaseObject modified +
ChemicalDrug modified +
Figure modified +
ReferenceGeneProduct modified +
GO_CellularComponent modified +
EntityWithAccessionedSequence modified +
ModifiedNucleotide modified +
ReferenceDatabase modified +
StableIdentifierReleaseStatus modified +
FragmentInsertionModification modified +
ReplacedResidue modified +
Taxon modified +
Cell modified +
PhysicalEntity modified +
PsiMod modified +
PositiveRegulation modified +
Publication modified +
InstanceEdit modified +
Compartment modified +
FunctionalStatus modified +
Polymerisation modified +
ControlReference modified +
SequenceOntology modified +
Depolymerisation modified +
Disease modified +
SimpleEntity modified +
EvidenceType modified +
URL modified +
Drug modified +
InteractionEvent modified +
Complex modified +
GenomeEncodedEntity modified +
Reaction modified +
OtherEntity modified +
NegativePrecedingEventReason modified +
BlackBoxEvent modified +
ReferenceRNASequence modified +
PositiveGeneExpressionRegulation modified +
CellDevelopmentStep modified +
CandidateSet modified +
ExternalOntology modified +
GO_MolecularFunction modified +
Summation modified +
Regulation modified +
ReferenceDNASequence modified +
NegativePrecedingEvent modified +
StableIdentifier modified +
EntitySet modified +
DefinedSet revised +
EntitySet revised +
Polymer revised +
Cell revised +
PhysicalEntity revised +
CandidateSet revised +
CellDevelopmentStep revised +
GenomeEncodedEntity revised +
Reaction revised +
OtherEntity revised +
EntityWithAccessionedSequence revised +
BlackBoxEvent revised +
RNADrug revised +
Drug revised +
InteractionEvent revised +
Complex revised +
FailedReaction revised +
ChemicalDrug revised +
SimpleEntity revised +
Pathway revised +
Event revised +
CellLineagePath revised +
Depolymerisation revised +
ReactionlikeEvent revised +
Polymerisation revised +
ProteinDrug revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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