Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
BlackBoxEvent reviewed +
ReactionlikeEvent reviewed +
FailedReaction reviewed +
Cell reviewed +
CandidateSet reviewed +
CellLineagePath reviewed +
PhysicalEntity reviewed +
Pathway reviewed +
OtherEntity reviewed +
Polymer reviewed +
InteractionEvent reviewed +
RNADrug reviewed +
EntityWithAccessionedSequence reviewed +
Drug reviewed +
SimpleEntity reviewed +
Event reviewed +
CellDevelopmentStep reviewed +
ChemicalDrug reviewed +
ProteinDrug reviewed +
Complex reviewed +
GenomeEncodedEntity reviewed +
EntitySet reviewed +
Depolymerisation reviewed +
Reaction reviewed +
Polymerisation reviewed +
DefinedSet reviewed +
CellLineagePath internalReviewed +
CellDevelopmentStep internalReviewed +
Event internalReviewed +
FailedReaction internalReviewed +
InteractionEvent internalReviewed +
ReactionlikeEvent internalReviewed +
BlackBoxEvent internalReviewed +
Pathway internalReviewed +
Depolymerisation internalReviewed +
Reaction internalReviewed +
Polymerisation internalReviewed +
Depolymerisation structureModified +
Polymerisation structureModified +
Reaction structureModified +
Pathway structureModified +
FailedReaction structureModified +
InteractionEvent structureModified +
ReactionlikeEvent structureModified +
BlackBoxEvent structureModified +
CellLineagePath structureModified +
Event structureModified +
CellDevelopmentStep structureModified +
ModifiedNucleotide created 1
GeneticallyModifiedResidue created 1
FragmentModification created 1
URL created 1
ReferenceDatabase created 1
CrosslinkedResidue created 1
Anatomy created 1
StableIdentifierReleaseStatus created 1
DatabaseObject created 1
AbstractModifiedResidue created 1
ReferenceGeneProduct created 1
EntitySet created 1
Reaction created 1
DefinedSet created 1
ReferenceEntity created 1
Polymerisation created 1
ProteinDrug created 1
Affiliation created 1
CellType created 1
ReactionType created 1
_UpdateTracker created 1
NegativePrecedingEvent created 1
NegativePrecedingEventReason created 1
ReferenceRNASequence created 1
IntraChainCrosslinkedResidue created 1
ExternalOntology created 1
RegulationReference created 1
EntityWithAccessionedSequence created 1
ModifiedResidue created 1
InterChainCrosslinkedResidue created 1
FunctionalStatusType created 1
GO_BiologicalProcess created 1
NegativeRegulation created 1
ReferenceMolecule created 1
FragmentInsertionModification created 1
Species created 1
BlackBoxEvent created 1
ReactionlikeEvent created 1
_Release created 1
DrugActionType created 1
CellLineagePath created 1
DeletedControlledVocabulary created 1
CandidateSet created 1
Depolymerisation created 1
GroupModifiedResidue created 1
TranscriptionalModification created 1
GenomeEncodedEntity created 1
EntityFunctionalStatus created 1
Regulation created 1
Summation created 1
RNADrug created 1
Drug created 1
ReplacedResidue created 1
DatabaseIdentifier created 1
Compartment created 1
GO_CellularComponent created 1
Event created 1
PositiveRegulation created 1
FrontPage created 1
CellDevelopmentStep created 1
InstanceEdit created 1
NegativeGeneExpressionRegulation created 1
NonsenseMutation created 1
StableIdentifier created 1
OtherEntity created 1
_Deleted created 1
GO_MolecularFunction created 1
CatalystActivityReference created 1
SequenceOntology created 1
FunctionalStatus created 1
ReferenceGroup created 1
PositiveGeneExpressionRegulation created 1
Book created 1
ControlReference created 1
InteractionEvent created 1
MarkerReference created 1
ReferenceIsoform created 1
ReferenceSequence created 1
SimpleEntity created 1
FragmentReplacedModification created 1
PhysicalEntity created 1
StableIdentifierHistory created 1
PsiMod created 1
Polymer created 1
ReviewStatus created 1
Pathway created 1
FailedReaction created 1
TranslationalModification created 1
Person created 1
Cell created 1
FragmentDeletionModification created 1
ControlledVocabulary created 1
ReferenceTherapeutic created 1
Figure created 1
RetractionStatus created 1
ReferenceDNASequence created 1
_DeletedInstance created 1
Disease created 1
CatalystActivity created 1
Complex created 1
Requirement created 1
PathwayDiagram created 1
LiteratureReference created 1
Publication created 1
Taxon created 1
ChemicalDrug created 1
EvidenceType created 1
EntityWithAccessionedSequence modified +
ModifiedResidue modified +
EntitySet modified +
Reaction modified +
DefinedSet modified +
ReferenceEntity modified +
Polymerisation modified +
Affiliation modified +
ProteinDrug modified +
CellType modified +
ReactionType modified +
_UpdateTracker modified +
NegativePrecedingEvent modified +
NegativePrecedingEventReason modified +
ReferenceRNASequence modified +
IntraChainCrosslinkedResidue modified +
RegulationReference modified +
ExternalOntology modified +
DatabaseObject modified +
AbstractModifiedResidue modified +
ReferenceGeneProduct modified +
GeneticallyModifiedResidue modified +
ModifiedNucleotide modified +
URL modified +
FragmentModification modified +
ReferenceDatabase modified +
CrosslinkedResidue modified +
Anatomy modified +
StableIdentifierReleaseStatus modified +
RNADrug modified +
Drug modified +
ReplacedResidue modified +
DatabaseIdentifier modified +
Compartment modified +
GO_CellularComponent modified +
PositiveRegulation modified +
Event modified +
FrontPage modified +
CellDevelopmentStep modified +
GroupModifiedResidue modified +
TranscriptionalModification modified +
Depolymerisation modified +
GenomeEncodedEntity modified +
Regulation modified +
EntityFunctionalStatus modified +
Summation modified +
FragmentInsertionModification modified +
Species modified +
ReactionlikeEvent modified +
BlackBoxEvent modified +
_Release modified +
DrugActionType modified +
DeletedControlledVocabulary modified +
CellLineagePath modified +
CandidateSet modified +
FunctionalStatusType modified +
InterChainCrosslinkedResidue modified +
GO_BiologicalProcess modified +
ReferenceMolecule modified +
NegativeRegulation modified +
InteractionEvent modified +
MarkerReference modified +
ReferenceIsoform modified +
ReferenceSequence modified +
SimpleEntity modified +
FragmentReplacedModification modified +
SequenceOntology modified +
FunctionalStatus modified +
ReferenceGroup modified +
PositiveGeneExpressionRegulation modified +
Book modified +
ControlReference modified +
_Deleted modified +
GO_MolecularFunction modified +
CatalystActivityReference modified +
InstanceEdit modified +
NegativeGeneExpressionRegulation modified +
NonsenseMutation modified +
StableIdentifier modified +
OtherEntity modified +
PathwayDiagram modified +
LiteratureReference modified +
Publication modified +
Taxon modified +
ChemicalDrug modified +
EvidenceType modified +
CatalystActivity modified +
Requirement modified +
Complex modified +
FailedReaction modified +
TranslationalModification modified +
Person modified +
Cell modified +
FragmentDeletionModification modified +
ReferenceTherapeutic modified +
ControlledVocabulary modified +
RetractionStatus modified +
Figure modified +
ReferenceDNASequence modified +
_DeletedInstance modified +
Disease modified +
PhysicalEntity modified +
StableIdentifierHistory modified +
PsiMod modified +
Polymer modified +
ReviewStatus modified +
Pathway modified +
ChemicalDrug edited +
CellDevelopmentStep edited +
Event edited +
SimpleEntity edited +
Drug edited +
RNADrug edited +
InteractionEvent edited +
EntityWithAccessionedSequence edited +
Complex edited +
GenomeEncodedEntity edited +
ProteinDrug edited +
Polymerisation edited +
Depolymerisation edited +
DefinedSet edited +
Reaction edited +
EntitySet edited +
CandidateSet edited +
CellLineagePath edited +
BlackBoxEvent edited +
ReactionlikeEvent edited +
Cell edited +
FailedReaction edited +
OtherEntity edited +
Pathway edited +
Polymer edited +
PhysicalEntity edited +
PhysicalEntity authored 1
Pathway authored +
OtherEntity authored 1
Polymer authored 1
BlackBoxEvent authored +
ReactionlikeEvent authored +
FailedReaction authored +
Cell authored 1
CandidateSet authored 1
CellLineagePath authored +
ProteinDrug authored 1
GenomeEncodedEntity authored 1
Complex authored 1
EntitySet authored 1
Reaction authored +
Depolymerisation authored +
Polymerisation authored +
DefinedSet authored 1
InteractionEvent authored +
RNADrug authored 1
EntityWithAccessionedSequence authored 1
Drug authored 1
Event authored +
SimpleEntity authored 1
CellDevelopmentStep authored +
ChemicalDrug authored 1
_Deleted replacementInstances +
ChemicalDrug revised +
CellDevelopmentStep revised +
SimpleEntity revised +
Event revised +
Drug revised +
EntityWithAccessionedSequence revised +
InteractionEvent revised +
RNADrug revised +
Depolymerisation revised +
Polymerisation revised +
DefinedSet revised +
Reaction revised +
EntitySet revised +
Complex revised +
GenomeEncodedEntity revised +
ProteinDrug revised +
CellLineagePath revised +
CandidateSet revised +
Cell revised +
FailedReaction revised +
ReactionlikeEvent revised +
BlackBoxEvent revised +
Polymer revised +
OtherEntity revised +
Pathway revised +
PhysicalEntity revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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