Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Compartment'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accession 1 TEXT N/A GO_CellularComponent ANY TEXT
componentOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
definition 1 TEXT N/A GO_CellularComponent   TEXT
hasPart + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
instanceOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A GO_CellularComponent   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase GO_CellularComponent   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
surroundedBy + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED

Referers of class 'Compartment' instances
Class name Attribute name Cardinality
ChemicalDrug compartment +
EntitySet compartment +
CellLineagePath compartment +
CandidateSet compartment +
FailedReaction compartment +
SimpleEntity compartment +
OtherEntity compartment +
ProteinDrug compartment +
Complex compartment +
Pathway compartment +
Drug compartment +
ReactionlikeEvent compartment +
BlackBoxEvent compartment +
Polymerisation compartment +
Polymer compartment +
Depolymerisation compartment +
GenomeEncodedEntity compartment +
EntityWithAccessionedSequence compartment +
RNADrug compartment +
CellDevelopmentStep compartment +
DefinedSet compartment +
Reaction compartment +
EntityWithAccessionedSequence goCellularComponent 1
SimpleEntity goCellularComponent 1
GenomeEncodedEntity goCellularComponent 1
CandidateSet goCellularComponent 1
Cell goCellularComponent 1
Polymer goCellularComponent 1
DefinedSet goCellularComponent 1
RNADrug goCellularComponent 1
ProteinDrug goCellularComponent 1
OtherEntity goCellularComponent 1
EntitySet goCellularComponent 1
PhysicalEntity goCellularComponent 1
Complex goCellularComponent 1
ChemicalDrug goCellularComponent 1
Drug goCellularComponent 1
Compartment instanceOf +
GO_CellularComponent instanceOf +
GO_CellularComponent hasPart +
Compartment hasPart +
Complex includedLocation +
Compartment componentOf +
GO_CellularComponent componentOf +
GO_CellularComponent surroundedBy +
Compartment surroundedBy +
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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