Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'GenomeEncodedEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species
Taxon
GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'GenomeEncodedEntity' instances

Class name Attribute name Cardinality
EntityFunctionalStatus diseaseEntity 1
CatalystActivity physicalEntity 1
ReactionlikeEvent input +
Polymerisation input +
FailedReaction input +
BlackBoxEvent input +
Reaction input +
Depolymerisation input +
_Deleted replacementInstances +
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
Requirement regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Polymer repeatedUnit +
EntityFunctionalStatus normalEntity 1
ReactionlikeEvent output +
Polymerisation output +
FailedReaction output +
Reaction output +
BlackBoxEvent output +
Depolymerisation output +
DefinedSet inferredTo +
SimpleEntity inferredTo +
RNADrug inferredTo +
ProteinDrug inferredTo +
OtherEntity inferredTo +
ChemicalDrug inferredTo +
Drug inferredTo +
GenomeEncodedEntity inferredTo +
Complex inferredTo +
Polymer inferredTo +
EntityWithAccessionedSequence inferredTo +
CandidateSet inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
CandidateSet hasCandidate +
Complex hasComponent +
PositiveRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
ProteinDrug inferredFrom +
RNADrug inferredFrom +
DefinedSet inferredFrom +
SimpleEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Drug inferredFrom +
ChemicalDrug inferredFrom +
OtherEntity inferredFrom +
Complex inferredFrom +
EntitySet inferredFrom +
CandidateSet inferredFrom +
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Polymer inferredFrom +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.