Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'GenomeEncodedEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species
Taxon
GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'GenomeEncodedEntity' instances

Class name Attribute name Cardinality
EntityFunctionalStatus diseaseEntity 1
Complex hasComponent +
_UpdateTracker updatedInstance 1
InteractionEvent partners +
SimpleEntity inferredFrom +
Drug inferredFrom +
OtherEntity inferredFrom +
RNADrug inferredFrom +
GenomeEncodedEntity inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
PhysicalEntity inferredFrom +
Cell inferredFrom +
Polymer inferredFrom +
Complex inferredFrom +
DefinedSet inferredFrom +
ChemicalDrug inferredFrom +
ProteinDrug inferredFrom +
EntitySet inferredFrom +
Regulation regulator 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
DefinedSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
_Deleted replacementInstances +
CatalystActivity physicalEntity 1
Polymer repeatedUnit +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
RNADrug inferredTo +
CandidateSet inferredTo +
Drug inferredTo +
SimpleEntity inferredTo +
EntitySet inferredTo +
ChemicalDrug inferredTo +
ProteinDrug inferredTo +
Polymer inferredTo +
Cell inferredTo +
Complex inferredTo +
DefinedSet inferredTo +
PhysicalEntity inferredTo +
CandidateSet hasCandidate +
BlackBoxEvent entityOnOtherCell +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Polymerisation requiredInputComponent +
EntityFunctionalStatus normalEntity 1
Polymerisation output +
ReactionlikeEvent output +
Depolymerisation output +
Reaction output +
BlackBoxEvent output +
FailedReaction output +
BlackBoxEvent input +
FailedReaction input +
Depolymerisation input +
Reaction input +
ReactionlikeEvent input +
Polymerisation input +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.