Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntityWithAccessionedSequence'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
endCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasModifiedResidue + INSTANCE AbstractModifiedResidue EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceSequence EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species GenomeEncodedEntity   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
startCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntityWithAccessionedSequence' instances

Class name Attribute name Cardinality
CellDevelopmentStep entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
_Deleted replacementInstances +
_UpdateTracker updatedInstance 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
EntityFunctionalStatus normalEntity 1
Cell RNAMarker +
Complex hasComponent +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
OtherEntity inferredTo +
EntitySet inferredTo +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredTo +
Drug inferredTo +
ChemicalDrug inferredTo +
DefinedSet inferredTo +
ProteinDrug inferredTo +
Cell inferredTo +
Cell proteinMarker +
CellDevelopmentStep requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
CatalystActivity physicalEntity 1
EntityFunctionalStatus diseaseEntity 1
CandidateSet hasCandidate +
Polymer repeatedUnit +
MarkerReference marker 1
BlackBoxEvent output +
Reaction output +
Depolymerisation output +
FailedReaction output +
Polymerisation output +
ReactionlikeEvent output +
BlackBoxEvent input +
Reaction input +
FailedReaction input +
Depolymerisation input +
Polymerisation input +
ReactionlikeEvent input +
InteractionEvent partners +
OtherEntity inferredFrom +
EntitySet inferredFrom +
RNADrug inferredFrom +
GenomeEncodedEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
Complex inferredFrom +
ProteinDrug inferredFrom +
Cell inferredFrom +
SimpleEntity inferredFrom +
Drug inferredFrom +
CandidateSet inferredFrom +
DefinedSet inferredFrom +
ChemicalDrug inferredFrom +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.