Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntityWithAccessionedSequence'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
endCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasModifiedResidue + INSTANCE AbstractModifiedResidue EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceSequence EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species GenomeEncodedEntity   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
startCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntityWithAccessionedSequence' instances
Class name Attribute name Cardinality
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
PositiveRegulation activeUnit +
Depolymerisation input +
Reaction input +
Polymerisation input +
ReactionlikeEvent input +
FailedReaction input +
BlackBoxEvent input +
_UpdateTracker updatedInstance +
EntityFunctionalStatus diseaseEntity 1
DefinedSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
ReactionlikeEvent output +
BlackBoxEvent output +
FailedReaction output +
Reaction output +
Depolymerisation output +
Polymerisation output +
CatalystActivity physicalEntity 1
Complex hasComponent +
EntityFunctionalStatus normalEntity 1
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
InteractionEvent partners +
Polymer repeatedUnit +
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
Regulation regulator 1
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Cell inferredTo +
Drug inferredTo +
RNADrug inferredTo +
EntitySet inferredTo +
Complex inferredTo +
GenomeEncodedEntity inferredTo +
ChemicalDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
DefinedSet inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredTo +
Polymer inferredTo +
ProteinDrug inferredTo +
PhysicalEntity inferredTo +
OtherEntity inferredTo +
Polymer inferredFrom +
ProteinDrug inferredFrom +
CandidateSet inferredFrom +
SimpleEntity inferredFrom +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
EntitySet inferredFrom +
Complex inferredFrom +
Cell inferredFrom +
Drug inferredFrom +
RNADrug inferredFrom +
DefinedSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
GenomeEncodedEntity inferredFrom +
ChemicalDrug inferredFrom +
Cell proteinMarker +
CandidateSet hasCandidate +
Cell RNAMarker +
_Deleted replacementInstances +
MarkerReference marker +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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