Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Cell'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
RNAMarker + INSTANCE EntityWithAccessionedSequence Cell   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
markerReference + INSTANCE MarkerReference Cell   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
organ 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
proteinMarker + INSTANCE EntityWithAccessionedSequence
Complex		 Cell   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species
Taxon		 Cell   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
tissue 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
tissueLayer 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED

Referers of class 'Cell' instances
Class name Attribute name Cardinality
_Deleted replacementInstances +
InteractionEvent partners +
Complex hasComponent +
Polymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
CatalystActivity physicalEntity 1
Polymerisation output +
BlackBoxEvent output +
CellDevelopmentStep output 1
FailedReaction output +
Depolymerisation output +
Reaction output +
ReactionlikeEvent output +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
CandidateSet hasCandidate +
_UpdateTracker updatedInstance 1
MarkerReference cell +
EntitySet hasMember +
CandidateSet hasMember +
DefinedSet hasMember +
Polymer repeatedUnit +
DefinedSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Drug inferredFrom +
Polymer inferredFrom +
ProteinDrug inferredFrom +
PhysicalEntity inferredFrom +
ChemicalDrug inferredFrom +
Complex inferredFrom +
RNADrug inferredFrom +
OtherEntity inferredFrom +
Cell inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
EntitySet inferredFrom +
FailedReaction input +
ReactionlikeEvent input +
Reaction input +
Depolymerisation input +
BlackBoxEvent input +
CellDevelopmentStep input 1
Polymerisation input +
EntityFunctionalStatus diseaseEntity 1
EntityFunctionalStatus normalEntity 1
Regulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
RNADrug inferredTo +
Complex inferredTo +
ChemicalDrug inferredTo +
Cell inferredTo +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
EntitySet inferredTo +
EntityWithAccessionedSequence inferredTo +
DefinedSet inferredTo +
Drug inferredTo +
Polymer inferredTo +
ProteinDrug inferredTo +
PhysicalEntity inferredTo +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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