Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'PhysicalEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'PhysicalEntity' instances
Class name Attribute name Cardinality
_Deleted replacementInstances +
BlackBoxEvent input +
Reaction input +
ReactionlikeEvent input +
FailedReaction input +
Depolymerisation input +
Polymerisation input +
BlackBoxEvent output +
Reaction output +
FailedReaction output +
ReactionlikeEvent output +
Polymerisation output +
Depolymerisation output +
CandidateSet hasCandidate +
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
Polymer inferredFrom +
ProteinDrug inferredFrom +
Drug inferredFrom +
CandidateSet inferredFrom +
RNADrug inferredFrom +
OtherEntity inferredFrom +
DefinedSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
ChemicalDrug inferredFrom +
SimpleEntity inferredFrom +
Polymer repeatedUnit +
EntitySet inferredTo +
PhysicalEntity inferredTo +
Polymer inferredTo +
ProteinDrug inferredTo +
CandidateSet inferredTo +
Drug inferredTo +
RNADrug inferredTo +
OtherEntity inferredTo +
DefinedSet inferredTo +
EntityWithAccessionedSequence inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
ChemicalDrug inferredTo +
Complex inferredTo +
DefinedSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex hasComponent +
CatalystActivity physicalEntity 1
NegativeRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
Regulation activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
EntityFunctionalStatus normalEntity 1
EntityFunctionalStatus diseaseEntity 1
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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