Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
EntityFunctionalStatus diseaseEntity 1
_Deleted replacementInstances +
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
Complex hasComponent +
PhysicalEntity inferredTo +
ChemicalDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
ProteinDrug inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
Polymer inferredTo +
Cell inferredTo +
OtherEntity inferredTo +
EntitySet inferredTo +
RNADrug inferredTo +
CandidateSet inferredTo +
DefinedSet inferredTo +
Complex inferredTo +
Drug inferredTo +
EntityFunctionalStatus normalEntity 1
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
ModifiedNucleotide modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
Depolymerisation output +
Polymerisation output +
ReactionlikeEvent output +
Reaction output +
FailedReaction output +
BlackBoxEvent output +
OtherEntity inferredFrom +
RNADrug inferredFrom +
EntitySet inferredFrom +
Cell inferredFrom +
Complex inferredFrom +
Drug inferredFrom +
DefinedSet inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
ProteinDrug inferredFrom +
PhysicalEntity inferredFrom +
ChemicalDrug inferredFrom +
SimpleEntity inferredFrom +
Polymer inferredFrom +
GenomeEncodedEntity inferredFrom +
Polymer repeatedUnit +
FailedReaction entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
InteractionEvent partners +
Polymerisation input +
Depolymerisation input +
ReactionlikeEvent input +
Reaction input +
FailedReaction input +
BlackBoxEvent input +
CandidateSet hasCandidate +
_UpdateTracker updatedInstance +
CatalystActivity physicalEntity 1
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.