Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'SimpleEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment SimpleEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceMolecule SimpleEntity ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species SimpleEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'SimpleEntity' instances
Class name Attribute name Cardinality
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent input +
BlackBoxEvent input +
Depolymerisation input +
Reaction input +
FailedReaction input +
Polymerisation input +
EntityFunctionalStatus diseaseEntity 1
InteractionEvent partners +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
ChemicalDrug inferredTo +
EntitySet inferredTo +
Cell inferredTo +
ProteinDrug inferredTo +
DefinedSet inferredTo +
OtherEntity inferredTo +
Drug inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
RNADrug inferredTo +
SimpleEntity inferredTo +
GenomeEncodedEntity inferredTo +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
PositiveRegulation regulator 1
Requirement regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
CatalystActivity activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CandidateSet hasCandidate +
SimpleEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
RNADrug inferredFrom +
Complex inferredFrom +
OtherEntity inferredFrom +
Drug inferredFrom +
PhysicalEntity inferredFrom +
DefinedSet inferredFrom +
ProteinDrug inferredFrom +
Cell inferredFrom +
ChemicalDrug inferredFrom +
EntitySet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Polymer inferredFrom +
CandidateSet inferredFrom +
DefinedSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
Polymer repeatedUnit +
CatalystActivity physicalEntity 1
_Deleted replacementInstances +
Complex hasComponent +
Reaction output +
Depolymerisation output +
BlackBoxEvent output +
Polymerisation output +
FailedReaction output +
ReactionlikeEvent output +
_UpdateTracker updatedInstance +
EntityFunctionalStatus normalEntity 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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