Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Complex'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment Complex   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
entityOnOtherCell + INSTANCE PhysicalEntity Complex   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasComponent + INSTANCE PhysicalEntity Complex ALL INTEGER(10) UNSIGNED
includedLocation + INSTANCE Compartment Complex   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isChimeric 1 OTHER N/A Complex   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species Complex   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Complex   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
stoichiometryKnown 1 OTHER N/A Complex   ENUM('TRUE','FALSE')
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'Complex' instances
Class name Attribute name Cardinality
_UpdateTracker updatedInstance 1
CandidateSet hasCandidate +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Requirement activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
Depolymerisation output +
BlackBoxEvent output +
FailedReaction output +
Polymerisation output +
ReactionlikeEvent output +
Reaction output +
Requirement regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Regulation regulator 1
Complex hasComponent +
InteractionEvent partners +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
CandidateSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
CatalystActivity physicalEntity 1
_Deleted replacementInstances +
Depolymerisation input +
Polymerisation input +
FailedReaction input +
BlackBoxEvent input +
ReactionlikeEvent input +
Reaction input +
EntitySet inferredFrom +
ChemicalDrug inferredFrom +
RNADrug inferredFrom +
PhysicalEntity inferredFrom +
ProteinDrug inferredFrom +
DefinedSet inferredFrom +
Cell inferredFrom +
SimpleEntity inferredFrom +
OtherEntity inferredFrom +
Drug inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
Polymer inferredFrom +
EntityWithAccessionedSequence inferredFrom +
CandidateSet inferredFrom +
Polymer repeatedUnit +
EntityFunctionalStatus diseaseEntity 1
DefinedSet inferredTo +
Cell inferredTo +
PhysicalEntity inferredTo +
ProteinDrug inferredTo +
EntitySet inferredTo +
ChemicalDrug inferredTo +
RNADrug inferredTo +
Complex inferredTo +
CandidateSet inferredTo +
Polymer inferredTo +
EntityWithAccessionedSequence inferredTo +
SimpleEntity inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
Drug inferredTo +
Cell proteinMarker +
EntityFunctionalStatus normalEntity 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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