Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntitySet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntitySet' instances
Class name Attribute name Cardinality
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
Drug inferredTo +
Cell inferredTo +
CandidateSet inferredTo +
RNADrug inferredTo +
ChemicalDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
DefinedSet inferredTo +
Complex inferredTo +
EntitySet inferredTo +
ProteinDrug inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredTo +
EntityFunctionalStatus diseaseEntity 1
Complex hasComponent +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
InteractionEvent partners +
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
ModifiedNucleotide modification 1
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
Regulation activeUnit +
_Deleted replacementInstances +
Depolymerisation output +
Polymerisation output +
Reaction output +
ReactionlikeEvent output +
FailedReaction output +
BlackBoxEvent output +
Polymer repeatedUnit +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
CandidateSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasCandidate +
EntityFunctionalStatus normalEntity 1
ReactionlikeEvent input +
FailedReaction input +
BlackBoxEvent input +
Reaction input +
Depolymerisation input +
Polymerisation input +
Polymer inferredFrom +
ProteinDrug inferredFrom +
GenomeEncodedEntity inferredFrom +
OtherEntity inferredFrom +
DefinedSet inferredFrom +
Complex inferredFrom +
EntitySet inferredFrom +
ChemicalDrug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
RNADrug inferredFrom +
Drug inferredFrom +
SimpleEntity inferredFrom +
PhysicalEntity inferredFrom +
Cell inferredFrom +
CandidateSet inferredFrom +
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
_UpdateTracker updatedInstance 1
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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