Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntitySet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntitySet' instances
Class name Attribute name Cardinality
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
EntityFunctionalStatus diseaseEntity 1
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
InteractionEvent partners +
_Deleted replacementInstances +
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
_UpdateTracker updatedInstance 1
Polymerisation output +
Reaction output +
BlackBoxEvent output +
FailedReaction output +
Depolymerisation output +
ReactionlikeEvent output +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
DefinedSet inferredTo +
Cell inferredTo +
ProteinDrug inferredTo +
Complex inferredTo +
RNADrug inferredTo +
SimpleEntity inferredTo +
ChemicalDrug inferredTo +
PhysicalEntity inferredTo +
Drug inferredTo +
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
GroupModifiedResidue modification 1
ModifiedNucleotide modification 1
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
DefinedSet inferredFrom +
Polymer inferredFrom +
GenomeEncodedEntity inferredFrom +
OtherEntity inferredFrom +
EntitySet inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex inferredFrom +
ProteinDrug inferredFrom +
Cell inferredFrom +
PhysicalEntity inferredFrom +
SimpleEntity inferredFrom +
RNADrug inferredFrom +
ChemicalDrug inferredFrom +
Drug inferredFrom +
Polymer repeatedUnit +
Complex hasComponent +
CandidateSet hasCandidate +
CatalystActivity physicalEntity 1
FailedReaction input +
Depolymerisation input +
ReactionlikeEvent input +
BlackBoxEvent input +
Polymerisation input +
Reaction input +
EntityFunctionalStatus normalEntity 1
PositiveRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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