Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntitySet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntitySet' instances
Class name Attribute name Cardinality
Regulation regulator 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
EntityFunctionalStatus diseaseEntity 1
CatalystActivity physicalEntity 1
EntityFunctionalStatus normalEntity 1
Cell inferredTo +
Polymer inferredTo +
Drug inferredTo +
Complex inferredTo +
PhysicalEntity inferredTo +
ProteinDrug inferredTo +
DefinedSet inferredTo +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
RNADrug inferredTo +
EntitySet inferredTo +
SimpleEntity inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
ChemicalDrug inferredTo +
Complex hasComponent +
PhysicalEntity inferredFrom +
Complex inferredFrom +
Drug inferredFrom +
Cell inferredFrom +
Polymer inferredFrom +
ProteinDrug inferredFrom +
SimpleEntity inferredFrom +
EntitySet inferredFrom +
RNADrug inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
DefinedSet inferredFrom +
ChemicalDrug inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
FailedReaction input +
Depolymerisation input +
BlackBoxEvent input +
Polymerisation input +
Reaction input +
ReactionlikeEvent input +
ReactionlikeEvent output +
Reaction output +
Depolymerisation output +
BlackBoxEvent output +
Polymerisation output +
FailedReaction output +
_Deleted replacementInstances +
GroupModifiedResidue modification 1
ModifiedNucleotide modification 1
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
_UpdateTracker updatedInstance +
CellDevelopmentStep requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
Requirement activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
InteractionEvent partners +
CandidateSet hasCandidate +
Polymer repeatedUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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