Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntitySet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntitySet' instances
Class name Attribute name Cardinality
EntityFunctionalStatus diseaseEntity 1
FailedReaction requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
_Deleted replacementInstances +
Depolymerisation input +
Polymerisation input +
ReactionlikeEvent input +
BlackBoxEvent input +
FailedReaction input +
Reaction input +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
Complex hasComponent +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Polymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
RNADrug inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
Complex inferredTo +
Polymer inferredTo +
DefinedSet inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
GenomeEncodedEntity inferredTo +
Drug inferredTo +
ChemicalDrug inferredTo +
Cell inferredTo +
ProteinDrug inferredTo +
OtherEntity inferredTo +
CandidateSet hasCandidate +
_UpdateTracker updatedInstance +
EntityFunctionalStatus normalEntity 1
CatalystActivity physicalEntity 1
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
EntitySet hasMember +
CandidateSet hasMember +
DefinedSet hasMember +
InteractionEvent partners +
Polymer repeatedUnit +
Depolymerisation output +
Polymerisation output +
ReactionlikeEvent output +
BlackBoxEvent output +
FailedReaction output +
Reaction output +
RNADrug inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
EntitySet inferredFrom +
Complex inferredFrom +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
GenomeEncodedEntity inferredFrom +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
Drug inferredFrom +
Cell inferredFrom +
ProteinDrug inferredFrom +
ChemicalDrug inferredFrom +
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
ModifiedNucleotide modification 1
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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