Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'SimpleEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment SimpleEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceMolecule SimpleEntity ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species SimpleEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'SimpleEntity' instances
Class name Attribute name Cardinality
Regulation activeUnit +
PositiveRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity physicalEntity 1
PhysicalEntityCellType physicalEntity 1
FailedReaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
_UpdateTracker updatedInstance 1
Requirement regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Polymer repeatedUnit +
InteractionEvent partners +
Complex hasComponent +
CandidateSet hasCandidate +
PhysicalEntity inferredTo +
Polymer inferredTo +
ProteinDrug inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
Complex inferredTo +
OtherEntity inferredTo +
DefinedSet inferredTo +
Cell inferredTo +
CandidateSet inferredTo +
RNADrug inferredTo +
EntitySet inferredTo +
Drug inferredTo +
EntityWithAccessionedSequence inferredTo +
ChemicalDrug inferredTo +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Complex entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
BlackBoxEvent output +
ReactionlikeEvent output +
Reaction output +
Depolymerisation output +
FailedReaction output +
Polymerisation output +
PhysicalEntity inferredFrom +
ProteinDrug inferredFrom +
SimpleEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
OtherEntity inferredFrom +
DefinedSet inferredFrom +
Polymer inferredFrom +
CandidateSet inferredFrom +
Cell inferredFrom +
EntitySet inferredFrom +
Drug inferredFrom +
RNADrug inferredFrom +
ChemicalDrug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
EntityFunctionalStatus normalEntity 1
ReactionlikeEvent input +
BlackBoxEvent input +
Polymerisation input +
Reaction input +
Depolymerisation input +
FailedReaction input +
EntityFunctionalStatus diseaseEntity 1
DefinedSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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