Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'SimpleEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment SimpleEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceMolecule SimpleEntity ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species SimpleEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'SimpleEntity' instances
Class name Attribute name Cardinality
Reaction input +
Polymerisation input +
FailedReaction input +
Depolymerisation input +
BlackBoxEvent input +
ReactionlikeEvent input +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Depolymerisation requiredInputComponent +
CandidateSet inferredTo +
Polymer inferredTo +
ProteinDrug inferredTo +
ChemicalDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
EntitySet inferredTo +
OtherEntity inferredTo +
Drug inferredTo +
Cell inferredTo +
DefinedSet inferredTo +
Complex inferredTo +
SimpleEntity inferredTo +
PhysicalEntity inferredTo +
EntityFunctionalStatus diseaseEntity 1
CatalystActivity activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
_UpdateTracker updatedInstance 1
CatalystActivity physicalEntity 1
PhysicalEntityCellType physicalEntity 1
CandidateSet hasCandidate +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
EntityFunctionalStatus normalEntity 1
ReactionlikeEvent output +
BlackBoxEvent output +
Depolymerisation output +
FailedReaction output +
Polymerisation output +
Reaction output +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
InteractionEvent partners +
_Deleted replacementInstances +
Complex hasComponent +
Polymer repeatedUnit +
PhysicalEntity inferredFrom +
DefinedSet inferredFrom +
Cell inferredFrom +
Complex inferredFrom +
SimpleEntity inferredFrom +
OtherEntity inferredFrom +
Drug inferredFrom +
GenomeEncodedEntity inferredFrom +
EntitySet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
RNADrug inferredFrom +
ProteinDrug inferredFrom +
ChemicalDrug inferredFrom +
CandidateSet inferredFrom +
Polymer inferredFrom +
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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