Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'SimpleEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment SimpleEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceMolecule SimpleEntity ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species SimpleEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'SimpleEntity' instances
Class name Attribute name Cardinality
BlackBoxEvent input +
Depolymerisation input +
Polymerisation input +
Reaction input +
FailedReaction input +
ReactionlikeEvent input +
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
EntityFunctionalStatus normalEntity 1
_UpdateTracker updatedInstance 1
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
Polymer repeatedUnit +
Polymer inferredFrom +
GenomeEncodedEntity inferredFrom +
PhysicalEntity inferredFrom +
ProteinDrug inferredFrom +
SimpleEntity inferredFrom +
RNADrug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
DefinedSet inferredFrom +
Cell inferredFrom +
Complex inferredFrom +
Drug inferredFrom +
ChemicalDrug inferredFrom +
CandidateSet inferredFrom +
OtherEntity inferredFrom +
EntitySet inferredFrom +
EntityFunctionalStatus diseaseEntity 1
InteractionEvent partners +
Depolymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Complex entityOnOtherCell +
Depolymerisation output +
BlackBoxEvent output +
Polymerisation output +
Reaction output +
FailedReaction output +
ReactionlikeEvent output +
Complex hasComponent +
_Deleted replacementInstances +
CandidateSet hasCandidate +
DefinedSet inferredTo +
EntityWithAccessionedSequence inferredTo +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
PhysicalEntity inferredTo +
Polymer inferredTo +
ProteinDrug inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
ChemicalDrug inferredTo +
OtherEntity inferredTo +
EntitySet inferredTo +
Drug inferredTo +
Cell inferredTo +
Complex inferredTo +
Requirement activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
Regulation activeUnit +
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
CatalystActivity physicalEntity 1
PhysicalEntityCellType physicalEntity 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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