Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'SimpleEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment SimpleEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceMolecule SimpleEntity ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species SimpleEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'SimpleEntity' instances
Class name Attribute name Cardinality
BlackBoxEvent input +
Polymerisation input +
ReactionlikeEvent input +
Depolymerisation input +
FailedReaction input +
Reaction input +
InteractionEvent partners +
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1
EntityFunctionalStatus diseaseEntity 1
_UpdateTracker updatedInstance 1
EntityFunctionalStatus normalEntity 1
CandidateSet hasCandidate +
ChemicalDrug inferredTo +
CandidateSet inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
Cell inferredTo +
DefinedSet inferredTo +
ProteinDrug inferredTo +
PhysicalEntity inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
Drug inferredTo +
RNADrug inferredTo +
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
EntitySet hasMember +
CandidateSet hasMember +
DefinedSet hasMember +
Polymerisation output +
BlackBoxEvent output +
ReactionlikeEvent output +
Depolymerisation output +
Reaction output +
FailedReaction output +
Complex hasComponent +
_Deleted replacementInstances +
PhysicalEntity inferredFrom +
ProteinDrug inferredFrom +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
EntitySet inferredFrom +
SimpleEntity inferredFrom +
RNADrug inferredFrom +
Drug inferredFrom +
Polymer inferredFrom +
CandidateSet inferredFrom +
ChemicalDrug inferredFrom +
Complex inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Cell inferredFrom +
NegativeGeneExpressionRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Polymer repeatedUnit +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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