Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
Reaction structureModified +
Pathway structureModified +
FailedReaction structureModified +
ReactionlikeEvent structureModified +
CellLineagePath structureModified +
CellDevelopmentStep structureModified +
BlackBoxEvent structureModified +
InteractionEvent structureModified +
Event structureModified +
Polymerisation structureModified +
Depolymerisation structureModified +
Reaction internalReviewed +
Pathway internalReviewed +
FailedReaction internalReviewed +
ReactionlikeEvent internalReviewed +
CellLineagePath internalReviewed +
BlackBoxEvent internalReviewed +
InteractionEvent internalReviewed +
Event internalReviewed +
Polymerisation internalReviewed +
Depolymerisation internalReviewed +
CellDevelopmentStep internalReviewed +
Pathway reviewed +
FailedReaction reviewed +
PhysicalEntity reviewed +
OtherEntity reviewed +
EntityWithAccessionedSequence reviewed +
ChemicalDrug reviewed +
DefinedSet reviewed +
ProteinDrug reviewed +
Event reviewed +
InteractionEvent reviewed +
BlackBoxEvent reviewed +
Depolymerisation reviewed +
Polymerisation reviewed +
EntitySet reviewed +
Drug reviewed +
RNADrug reviewed +
Polymer reviewed +
Complex reviewed +
Reaction reviewed +
Cell reviewed +
SimpleEntity reviewed +
CellLineagePath reviewed +
ReactionlikeEvent reviewed +
GenomeEncodedEntity reviewed +
CellDevelopmentStep reviewed +
CandidateSet reviewed +
_Deleted replacementInstances +
ReferenceGroup created 1
DeletedControlledVocabulary created 1
FailedReaction created 1
FragmentModification created 1
ReferenceDatabase created 1
StableIdentifier created 1
PathwayDiagram created 1
InteractionEvent created 1
EvidenceType created 1
StableIdentifierHistory created 1
RNADrug created 1
GO_CellularComponent created 1
Polymer created 1
IntraChainCrosslinkedResidue created 1
FragmentReplacedModification created 1
ReferenceSequence created 1
ReferenceGeneProduct created 1
ModifiedNucleotide created 1
NegativePrecedingEventReason created 1
GenomeEncodedEntity created 1
Anatomy created 1
CellDevelopmentStep created 1
GO_MolecularFunction created 1
Taxon created 1
FragmentInsertionModification created 1
RetractionStatus created 1
PhysicalEntityCellType created 1
Pathway created 1
PositiveRegulation created 1
OtherEntity created 1
EntityWithAccessionedSequence created 1
Requirement created 1
RegulationReference created 1
GO_BiologicalProcess created 1
EntitySet created 1
CatalystActivityReference created 1
ReferenceEntity created 1
Complex created 1
ReferenceMolecule created 1
Person created 1
NegativeGeneExpressionRegulation created 1
Publication created 1
Regulation created 1
_DeletedInstance created 1
_UpdateTracker created 1
NegativeRegulation created 1
Disease created 1
TranslationalModification created 1
ModifiedResidue created 1
PsiMod created 1
ReactionType created 1
ControlReference created 1
_Deleted created 1
ReferenceRNASequence created 1
AbstractModifiedResidue created 1
GeneticallyModifiedResidue created 1
ChemicalDrug created 1
ControlledVocabulary created 1
BlackBoxEvent created 1
ReplacedResidue created 1
FunctionalStatusType created 1
CatalystActivity created 1
ReferenceTherapeutic created 1
ReviewStatus created 1
Affiliation created 1
DatabaseObject created 1
Cell created 1
FragmentDeletionModification created 1
InterChainCrosslinkedResidue created 1
StableIdentifierReleaseStatus created 1
Summation created 1
URL created 1
CrosslinkedResidue created 1
ReferenceIsoform created 1
SequenceOntology created 1
NegativePrecedingEvent created 1
Compartment created 1
NonsenseMutation created 1
Book created 1
MarkerReference created 1
FunctionalStatus created 1
GroupModifiedResidue created 1
InstanceEdit created 1
FrontPage created 1
EntityFunctionalStatus created 1
Species created 1
PhysicalEntity created 1
CellType created 1
Figure created 1
PositiveGeneExpressionRegulation created 1
DefinedSet created 1
ProteinDrug created 1
Event created 1
_Release created 1
Polymerisation created 1
Depolymerisation created 1
Drug created 1
Reaction created 1
TranscriptionalModification created 1
ReferenceDNASequence created 1
DatabaseIdentifier created 1
ExternalOntology created 1
SimpleEntity created 1
ReactionlikeEvent created 1
CellLineagePath created 1
LiteratureReference created 1
CandidateSet created 1
DrugActionType created 1
Pathway revised +
FailedReaction revised +
PhysicalEntity revised +
OtherEntity revised +
EntityWithAccessionedSequence revised +
ChemicalDrug revised +
DefinedSet revised +
ProteinDrug revised +
Depolymerisation revised +
Polymerisation revised +
EntitySet revised +
Event revised +
InteractionEvent revised +
BlackBoxEvent revised +
RNADrug revised +
Drug revised +
Reaction revised +
Complex revised +
Polymer revised +
Cell revised +
CellLineagePath revised +
ReactionlikeEvent revised +
SimpleEntity revised +
GenomeEncodedEntity revised +
CellDevelopmentStep revised +
CandidateSet revised +
CandidateSet edited +
CellDevelopmentStep edited +
GenomeEncodedEntity edited +
CellLineagePath edited +
ReactionlikeEvent edited +
SimpleEntity edited +
Cell edited +
Reaction edited +
Complex edited +
Polymer edited +
Drug edited +
RNADrug edited +
EntitySet edited +
Polymerisation edited +
Depolymerisation edited +
InteractionEvent edited +
Event edited +
BlackBoxEvent edited +
ProteinDrug edited +
DefinedSet edited +
ChemicalDrug edited +
PhysicalEntity edited +
EntityWithAccessionedSequence edited +
OtherEntity edited +
FailedReaction edited +
Pathway edited +
RegulationReference modified +
PositiveRegulation modified +
EntityWithAccessionedSequence modified +
OtherEntity modified +
Requirement modified +
CatalystActivityReference modified +
ReferenceEntity modified +
EntitySet modified +
GO_BiologicalProcess modified +
FragmentInsertionModification modified +
Taxon modified +
Pathway modified +
RetractionStatus modified +
PhysicalEntityCellType modified +
_UpdateTracker modified +
_DeletedInstance modified +
TranslationalModification modified +
Disease modified +
NegativeRegulation modified +
NegativeGeneExpressionRegulation modified +
Complex modified +
Person modified +
ReferenceMolecule modified +
Publication modified +
Regulation modified +
PathwayDiagram modified +
StableIdentifier modified +
RNADrug modified +
EvidenceType modified +
InteractionEvent modified +
StableIdentifierHistory modified +
ReferenceGroup modified +
FailedReaction modified +
ReferenceDatabase modified +
FragmentModification modified +
DeletedControlledVocabulary modified +
GenomeEncodedEntity modified +
ModifiedNucleotide modified +
NegativePrecedingEventReason modified +
CellDevelopmentStep modified +
Anatomy modified +
GO_MolecularFunction modified +
IntraChainCrosslinkedResidue modified +
FragmentReplacedModification modified +
ReferenceSequence modified +
Polymer modified +
GO_CellularComponent modified +
ReferenceGeneProduct modified +
Figure modified +
ProteinDrug modified +
DefinedSet modified +
PositiveGeneExpressionRegulation modified +
PhysicalEntity modified +
CellType modified +
Drug modified +
Event modified +
Polymerisation modified +
Depolymerisation modified +
_Release modified +
NonsenseMutation modified +
Compartment modified +
NegativePrecedingEvent modified +
EntityFunctionalStatus modified +
FrontPage modified +
InstanceEdit modified +
Species modified +
Book modified +
MarkerReference modified +
GroupModifiedResidue modified +
FunctionalStatus modified +
SimpleEntity modified +
ReactionlikeEvent modified +
CellLineagePath modified +
LiteratureReference modified +
CandidateSet modified +
DrugActionType modified +
ReferenceDNASequence modified +
TranscriptionalModification modified +
DatabaseIdentifier modified +
Reaction modified +
ExternalOntology modified +
ChemicalDrug modified +
ControlledVocabulary modified +
GeneticallyModifiedResidue modified +
CatalystActivity modified +
ReferenceTherapeutic modified +
BlackBoxEvent modified +
ReplacedResidue modified +
FunctionalStatusType modified +
ModifiedResidue modified +
ControlReference modified +
_Deleted modified +
AbstractModifiedResidue modified +
ReferenceRNASequence modified +
PsiMod modified +
ReactionType modified +
InterChainCrosslinkedResidue modified +
StableIdentifierReleaseStatus modified +
ReferenceIsoform modified +
SequenceOntology modified +
Summation modified +
CrosslinkedResidue modified +
URL modified +
DatabaseObject modified +
ReviewStatus modified +
Affiliation modified +
FragmentDeletionModification modified +
Cell modified +
CellDevelopmentStep authored +
CandidateSet authored 1
ReactionlikeEvent authored +
CellLineagePath authored +
SimpleEntity authored 1
GenomeEncodedEntity authored 1
Cell authored 1
Reaction authored +
Polymer authored 1
Complex authored 1
Depolymerisation authored +
Polymerisation authored +
EntitySet authored 1
Event authored +
InteractionEvent authored +
BlackBoxEvent authored +
Drug authored 1
RNADrug authored 1
PhysicalEntity authored 1
EntityWithAccessionedSequence authored 1
OtherEntity authored 1
ProteinDrug authored 1
DefinedSet authored 1
ChemicalDrug authored 1
FailedReaction authored +
Pathway authored +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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