Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
Book modified +
ModifiedNucleotide modified +
CatalystActivityReference modified +
FailedReaction modified +
AbstractModifiedResidue modified +
StableIdentifierReleaseStatus modified +
Pathway modified +
CandidateSet modified +
ReferenceDatabase modified +
GeneticallyModifiedResidue modified +
PathwayDiagram modified +
FragmentInsertionModification modified +
CellDevelopmentStep modified +
GO_MolecularFunction modified +
Drug modified +
FragmentReplacedModification modified +
ReferenceMolecule modified +
TranslationalModification modified +
OtherEntity modified +
ControlledVocabulary modified +
NegativeGeneExpressionRegulation modified +
GroupModifiedResidue modified +
EntityWithAccessionedSequence modified +
ReferenceEntity modified +
NonsenseMutation modified +
FragmentDeletionModification modified +
CellType modified +
CellLineagePath modified +
GenomeEncodedEntity modified +
FunctionalStatus modified +
ModifiedResidue modified +
CatalystActivity modified +
EntityFunctionalStatus modified +
ReviewStatus modified +
NegativePrecedingEventReason modified +
ReferenceSequence modified +
FragmentModification modified +
PositiveGeneExpressionRegulation modified +
FunctionalStatusType modified +
PositiveRegulation modified +
Taxon modified +
DatabaseIdentifier modified +
Polymerisation modified +
GO_BiologicalProcess modified +
StableIdentifierHistory modified +
ReactionlikeEvent modified +
_UpdateTracker modified +
RegulationReference modified +
Affiliation modified +
ExternalOntology modified +
Anatomy modified +
LiteratureReference modified +
Person modified +
InteractionEvent modified +
Cell modified +
InterChainCrosslinkedResidue modified +
RetractionStatus modified +
InstanceEdit modified +
IntraChainCrosslinkedResidue modified +
_Deleted modified +
PsiMod modified +
ReferenceTherapeutic modified +
NegativeRegulation modified +
ReferenceGeneProduct modified +
ChemicalDrug modified +
Requirement modified +
Figure modified +
Event modified +
PhysicalEntity modified +
GO_CellularComponent modified +
MarkerReference modified +
URL modified +
Disease modified +
_DeletedInstance modified +
Summation modified +
NegativePrecedingEvent modified +
SequenceOntology modified +
Depolymerisation modified +
PhysicalEntityCellType modified +
ReferenceRNASequence modified +
ReferenceDNASequence modified +
Compartment modified +
TranscriptionalModification modified +
RNADrug modified +
Regulation modified +
EvidenceType modified +
ControlReference modified +
ReactionType modified +
ProteinDrug modified +
CrosslinkedResidue modified +
BlackBoxEvent modified +
Reaction modified +
ReferenceIsoform modified +
DatabaseObject modified +
DrugActionType modified +
StableIdentifier modified +
FrontPage modified +
ReplacedResidue modified +
EntitySet modified +
Complex modified +
ReferenceGroup modified +
_Release modified +
Publication modified +
DeletedControlledVocabulary modified +
SimpleEntity modified +
DefinedSet modified +
Polymer modified +
Species modified +
_Deleted replacementInstances +
Pathway reviewed +
CandidateSet reviewed +
ChemicalDrug reviewed +
FailedReaction reviewed +
ProteinDrug reviewed +
Polymerisation reviewed +
Drug reviewed +
BlackBoxEvent reviewed +
Event reviewed +
CellDevelopmentStep reviewed +
PhysicalEntity reviewed +
Reaction reviewed +
OtherEntity reviewed +
EntityWithAccessionedSequence reviewed +
EntitySet reviewed +
Depolymerisation reviewed +
Complex reviewed +
ReactionlikeEvent reviewed +
DefinedSet reviewed +
Polymer reviewed +
Cell reviewed +
CellLineagePath reviewed +
GenomeEncodedEntity reviewed +
RNADrug reviewed +
SimpleEntity reviewed +
InteractionEvent reviewed +
ReactionlikeEvent structureModified +
Depolymerisation structureModified +
FailedReaction structureModified +
Pathway structureModified +
Reaction structureModified +
InteractionEvent structureModified +
Event structureModified +
CellDevelopmentStep structureModified +
BlackBoxEvent structureModified +
Polymerisation structureModified +
CellLineagePath structureModified +
Drug edited +
Polymerisation edited +
Event edited +
CellDevelopmentStep edited +
BlackBoxEvent edited +
Reaction edited +
PhysicalEntity edited +
Pathway edited +
CandidateSet edited +
ChemicalDrug edited +
FailedReaction edited +
ProteinDrug edited +
CellLineagePath edited +
Polymer edited +
DefinedSet edited +
Cell edited +
GenomeEncodedEntity edited +
RNADrug edited +
SimpleEntity edited +
InteractionEvent edited +
OtherEntity edited +
EntityWithAccessionedSequence edited +
Depolymerisation edited +
Complex edited +
EntitySet edited +
ReactionlikeEvent edited +
EntityWithAccessionedSequence revised +
OtherEntity revised +
ReactionlikeEvent revised +
EntitySet revised +
Complex revised +
Depolymerisation revised +
RNADrug revised +
Cell revised +
Polymer revised +
DefinedSet revised +
CellLineagePath revised +
GenomeEncodedEntity revised +
SimpleEntity revised +
InteractionEvent revised +
ChemicalDrug revised +
Pathway revised +
CandidateSet revised +
ProteinDrug revised +
FailedReaction revised +
Polymerisation revised +
Drug revised +
PhysicalEntity revised +
Reaction revised +
BlackBoxEvent revised +
CellDevelopmentStep revised +
Event revised +
ReactionlikeEvent internalReviewed +
Depolymerisation internalReviewed +
FailedReaction internalReviewed +
Pathway internalReviewed +
InteractionEvent internalReviewed +
Reaction internalReviewed +
BlackBoxEvent internalReviewed +
Event internalReviewed +
CellDevelopmentStep internalReviewed +
Polymerisation internalReviewed +
CellLineagePath internalReviewed +
EntityWithAccessionedSequence authored 1
OtherEntity authored 1
ReactionlikeEvent authored +
Complex authored 1
Depolymerisation authored +
EntitySet authored 1
RNADrug authored 1
Polymer authored 1
GenomeEncodedEntity authored 1
DefinedSet authored 1
Cell authored 1
CellLineagePath authored +
SimpleEntity authored 1
InteractionEvent authored +
ChemicalDrug authored 1
Pathway authored +
CandidateSet authored 1
ProteinDrug authored 1
FailedReaction authored +
Drug authored 1
Polymerisation authored +
Reaction authored +
PhysicalEntity authored 1
Event authored +
CellDevelopmentStep authored +
BlackBoxEvent authored +
ReferenceGroup created 1
Publication created 1
_Release created 1
DeletedControlledVocabulary created 1
ReplacedResidue created 1
EntitySet created 1
Complex created 1
DefinedSet created 1
Polymer created 1
Species created 1
SimpleEntity created 1
CrosslinkedResidue created 1
EvidenceType created 1
ControlReference created 1
ReactionType created 1
ProteinDrug created 1
ReferenceIsoform created 1
DatabaseObject created 1
DrugActionType created 1
StableIdentifier created 1
FrontPage created 1
BlackBoxEvent created 1
Reaction created 1
ReferenceRNASequence created 1
Compartment created 1
ReferenceDNASequence created 1
NegativePrecedingEvent created 1
SequenceOntology created 1
Depolymerisation created 1
PhysicalEntityCellType created 1
Regulation created 1
RNADrug created 1
TranscriptionalModification created 1
NegativeRegulation created 1
ReferenceGeneProduct created 1
ChemicalDrug created 1
IntraChainCrosslinkedResidue created 1
PsiMod created 1
_Deleted created 1
ReferenceTherapeutic created 1
Disease created 1
MarkerReference created 1
URL created 1
GO_CellularComponent created 1
_DeletedInstance created 1
Summation created 1
Requirement created 1
Figure created 1
Event created 1
PhysicalEntity created 1
_UpdateTracker created 1
RegulationReference created 1
Affiliation created 1
ExternalOntology created 1
StableIdentifierHistory created 1
ReactionlikeEvent created 1
Cell created 1
InterChainCrosslinkedResidue created 1
RetractionStatus created 1
InstanceEdit created 1
Anatomy created 1
LiteratureReference created 1
Person created 1
InteractionEvent created 1
PositiveGeneExpressionRegulation created 1
FunctionalStatusType created 1
EntityFunctionalStatus created 1
ReviewStatus created 1
NegativePrecedingEventReason created 1
FragmentModification created 1
ReferenceSequence created 1
Taxon created 1
DatabaseIdentifier created 1
Polymerisation created 1
GO_BiologicalProcess created 1
PositiveRegulation created 1
OtherEntity created 1
NegativeGeneExpressionRegulation created 1
ControlledVocabulary created 1
GroupModifiedResidue created 1
EntityWithAccessionedSequence created 1
ReferenceEntity created 1
ReferenceMolecule created 1
TranslationalModification created 1
GenomeEncodedEntity created 1
CellLineagePath created 1
FunctionalStatus created 1
ModifiedResidue created 1
CatalystActivity created 1
NonsenseMutation created 1
FragmentDeletionModification created 1
CellType created 1
Pathway created 1
CandidateSet created 1
StableIdentifierReleaseStatus created 1
ReferenceDatabase created 1
GeneticallyModifiedResidue created 1
ModifiedNucleotide created 1
Book created 1
CatalystActivityReference created 1
AbstractModifiedResidue created 1
FailedReaction created 1
Drug created 1
FragmentReplacedModification created 1
FragmentInsertionModification created 1
PathwayDiagram created 1
CellDevelopmentStep created 1
GO_MolecularFunction created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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