Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
RegulationReference created 1
Depolymerisation created 1
InstanceEdit created 1
OtherEntity created 1
PositiveGeneExpressionRegulation created 1
Publication created 1
ReferenceGroup created 1
Complex created 1
PhysicalEntityCellType created 1
FunctionalStatusType created 1
Drug created 1
PathwayDiagram created 1
_DeletedInstance created 1
DeletedControlledVocabulary created 1
ReferenceTherapeutic created 1
StableIdentifier created 1
SequenceOntology created 1
StableIdentifierHistory created 1
DrugActionType created 1
Anatomy created 1
Reaction created 1
Figure created 1
ProteinDrug created 1
CellLineagePath created 1
FragmentInsertionModification created 1
FragmentModification created 1
TranscriptionalModification created 1
Polymer created 1
CatalystActivity created 1
Regulation created 1
FragmentReplacedModification created 1
EvidenceType created 1
NegativePrecedingEvent created 1
FrontPage created 1
ChemicalDrug created 1
ReferenceGeneProduct created 1
Cell created 1
ReplacedResidue created 1
URL created 1
_Deleted created 1
Book created 1
RetractionStatus created 1
CatalystActivityReference created 1
CellType created 1
ReferenceEntity created 1
ReferenceDNASequence created 1
DatabaseIdentifier created 1
_UpdateTracker created 1
PsiMod created 1
PhysicalEntity created 1
IntraChainCrosslinkedResidue created 1
TranslationalModification created 1
Affiliation created 1
RNADrug created 1
ReactionType created 1
InteractionEvent created 1
EntityFunctionalStatus created 1
Species created 1
Person created 1
_Release created 1
ReferenceIsoform created 1
GO_MolecularFunction created 1
Compartment created 1
ReactionlikeEvent created 1
InterChainCrosslinkedResidue created 1
Summation created 1
DefinedSet created 1
Event created 1
GenomeEncodedEntity created 1
ReferenceSequence created 1
ReferenceMolecule created 1
ControlledVocabulary created 1
NegativePrecedingEventReason created 1
AbstractModifiedResidue created 1
Pathway created 1
PositiveRegulation created 1
MarkerReference created 1
Taxon created 1
StableIdentifierReleaseStatus created 1
ControlReference created 1
GO_BiologicalProcess created 1
Disease created 1
ModifiedResidue created 1
ExternalOntology created 1
Polymerisation created 1
CandidateSet created 1
DatabaseObject created 1
CrosslinkedResidue created 1
Requirement created 1
ReferenceRNASequence created 1
NegativeGeneExpressionRegulation created 1
CellDevelopmentStep created 1
NegativeRegulation created 1
SimpleEntity created 1
FragmentDeletionModification created 1
EntitySet created 1
GroupModifiedResidue created 1
BlackBoxEvent created 1
ReviewStatus created 1
NonsenseMutation created 1
GO_CellularComponent created 1
FunctionalStatus created 1
FailedReaction created 1
GeneticallyModifiedResidue created 1
ReferenceDatabase created 1
EntityWithAccessionedSequence created 1
ModifiedNucleotide created 1
LiteratureReference created 1
RNADrug revised +
Depolymerisation revised +
OtherEntity revised +
InteractionEvent revised +
Drug revised +
ChemicalDrug revised +
Complex revised +
SimpleEntity revised +
CellDevelopmentStep revised +
DefinedSet revised +
ReactionlikeEvent revised +
Cell revised +
EntitySet revised +
GenomeEncodedEntity revised +
Event revised +
Pathway revised +
ProteinDrug revised +
Reaction revised +
CellLineagePath revised +
BlackBoxEvent revised +
PhysicalEntity revised +
FailedReaction revised +
Polymerisation revised +
Polymer revised +
CandidateSet revised +
EntityWithAccessionedSequence revised +
Pathway edited +
GenomeEncodedEntity edited +
Event edited +
EntitySet edited +
CandidateSet edited +
Polymer edited +
Polymerisation edited +
EntityWithAccessionedSequence edited +
FailedReaction edited +
PhysicalEntity edited +
Reaction edited +
CellLineagePath edited +
ProteinDrug edited +
BlackBoxEvent edited +
InteractionEvent edited +
OtherEntity edited +
RNADrug edited +
Depolymerisation edited +
DefinedSet edited +
Cell edited +
ReactionlikeEvent edited +
SimpleEntity edited +
CellDevelopmentStep edited +
Drug edited +
ChemicalDrug edited +
Complex edited +
InteractionEvent reviewed +
OtherEntity reviewed +
Depolymerisation reviewed +
RNADrug reviewed +
ReactionlikeEvent reviewed +
Cell reviewed +
DefinedSet reviewed +
CellDevelopmentStep reviewed +
SimpleEntity reviewed +
Complex reviewed +
Drug reviewed +
ChemicalDrug reviewed +
Pathway reviewed +
GenomeEncodedEntity reviewed +
Event reviewed +
EntitySet reviewed +
EntityWithAccessionedSequence reviewed +
Polymerisation reviewed +
Polymer reviewed +
CandidateSet reviewed +
FailedReaction reviewed +
PhysicalEntity reviewed +
BlackBoxEvent reviewed +
Reaction reviewed +
CellLineagePath reviewed +
ProteinDrug reviewed +
Cell authored 1
ReactionlikeEvent authored +
DefinedSet authored 1
CellDevelopmentStep authored +
SimpleEntity authored 1
Complex authored 1
Drug authored 1
ChemicalDrug authored 1
InteractionEvent authored +
OtherEntity authored 1
Depolymerisation authored +
RNADrug authored 1
EntityWithAccessionedSequence authored 1
CandidateSet authored 1
Polymer authored 1
Polymerisation authored +
FailedReaction authored +
PhysicalEntity authored 1
BlackBoxEvent authored +
Reaction authored +
ProteinDrug authored 1
CellLineagePath authored +
Pathway authored +
Event authored +
EntitySet authored 1
GenomeEncodedEntity authored 1
Polymerisation structureModified +
ReactionlikeEvent structureModified +
FailedReaction structureModified +
CellDevelopmentStep structureModified +
CellLineagePath structureModified +
Reaction structureModified +
BlackBoxEvent structureModified +
InteractionEvent structureModified +
Pathway structureModified +
Event structureModified +
Depolymerisation structureModified +
_Deleted replacementInstances +
InteractionEvent internalReviewed +
Pathway internalReviewed +
Depolymerisation internalReviewed +
Event internalReviewed +
ReactionlikeEvent internalReviewed +
Polymerisation internalReviewed +
FailedReaction internalReviewed +
CellDevelopmentStep internalReviewed +
BlackBoxEvent internalReviewed +
CellLineagePath internalReviewed +
Reaction internalReviewed +
EntitySet modified +
GroupModifiedResidue modified +
ReviewStatus modified +
BlackBoxEvent modified +
GO_CellularComponent modified +
NonsenseMutation modified +
ReferenceDatabase modified +
FailedReaction modified +
GeneticallyModifiedResidue modified +
FunctionalStatus modified +
LiteratureReference modified +
EntityWithAccessionedSequence modified +
ModifiedNucleotide modified +
CrosslinkedResidue modified +
DatabaseObject modified +
Requirement modified +
FragmentDeletionModification modified +
SimpleEntity modified +
ReferenceRNASequence modified +
CellDevelopmentStep modified +
NegativeRegulation modified +
NegativeGeneExpressionRegulation modified +
Event modified +
GenomeEncodedEntity modified +
ControlledVocabulary modified +
ReferenceMolecule modified +
ReferenceSequence modified +
PositiveRegulation modified +
NegativePrecedingEventReason modified +
Pathway modified +
AbstractModifiedResidue modified +
Taxon modified +
StableIdentifierReleaseStatus modified +
MarkerReference modified +
Disease modified +
GO_BiologicalProcess modified +
ControlReference modified +
CandidateSet modified +
Polymerisation modified +
ExternalOntology modified +
ModifiedResidue modified +
ReactionType modified +
RNADrug modified +
InteractionEvent modified +
EntityFunctionalStatus modified +
Species modified +
_Release modified +
Person modified +
GO_MolecularFunction modified +
ReferenceIsoform modified +
Compartment modified +
DefinedSet modified +
InterChainCrosslinkedResidue modified +
Summation modified +
ReactionlikeEvent modified +
_Deleted modified +
Book modified +
URL modified +
CellType modified +
CatalystActivityReference modified +
RetractionStatus modified +
ReferenceDNASequence modified +
ReferenceEntity modified +
DatabaseIdentifier modified +
_UpdateTracker modified +
PsiMod modified +
PhysicalEntity modified +
IntraChainCrosslinkedResidue modified +
TranslationalModification modified +
Affiliation modified +
CatalystActivity modified +
Regulation modified +
EvidenceType modified +
FragmentReplacedModification modified +
FrontPage modified +
NegativePrecedingEvent modified +
ChemicalDrug modified +
ReferenceGeneProduct modified +
ReplacedResidue modified +
Cell modified +
DeletedControlledVocabulary modified +
_DeletedInstance modified +
SequenceOntology modified +
StableIdentifier modified +
ReferenceTherapeutic modified +
StableIdentifierHistory modified +
Figure modified +
Reaction modified +
CellLineagePath modified +
ProteinDrug modified +
Anatomy modified +
DrugActionType modified +
FragmentInsertionModification modified +
FragmentModification modified +
Polymer modified +
TranscriptionalModification modified +
RegulationReference modified +
Depolymerisation modified +
OtherEntity modified +
InstanceEdit modified +
PositiveGeneExpressionRegulation modified +
ReferenceGroup modified +
Publication modified +
FunctionalStatusType modified +
Drug modified +
Complex modified +
PhysicalEntityCellType modified +
PathwayDiagram modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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