Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
Compartment created 1
SequenceOntology created 1
GroupModifiedResidue created 1
PathwayDiagram created 1
ModifiedNucleotide created 1
PhysicalEntityCellType created 1
GO_BiologicalProcess created 1
NegativeRegulation created 1
CellType created 1
DeletedControlledVocabulary created 1
ExternalOntology created 1
LiteratureReference created 1
NegativePrecedingEventReason created 1
Complex created 1
TranscriptionalModification created 1
ReactionlikeEvent created 1
ReferenceDNASequence created 1
ModifiedResidue created 1
GeneticallyModifiedResidue created 1
Species created 1
EntityWithAccessionedSequence created 1
EntitySet created 1
_Release created 1
Disease created 1
ReferenceTherapeutic created 1
OtherEntity created 1
Pathway created 1
Taxon created 1
DrugActionType created 1
Person created 1
Polymerisation created 1
FrontPage created 1
Requirement created 1
ReactionType created 1
Cell created 1
GO_MolecularFunction created 1
FailedReaction created 1
PhysicalEntity created 1
Book created 1
URL created 1
ReferenceGeneProduct created 1
GO_CellularComponent created 1
Reaction created 1
DatabaseObject created 1
FunctionalStatusType created 1
PositiveRegulation created 1
MarkerReference created 1
EvidenceType created 1
Anatomy created 1
StableIdentifierReleaseStatus created 1
_UpdateTracker created 1
InstanceEdit created 1
ReferenceGroup created 1
NegativePrecedingEvent created 1
PositiveGeneExpressionRegulation created 1
BlackBoxEvent created 1
ReferenceIsoform created 1
FunctionalStatus created 1
ReplacedResidue created 1
_DeletedInstance created 1
SimpleEntity created 1
FragmentDeletionModification created 1
Publication created 1
FragmentInsertionModification created 1
RNADrug created 1
Affiliation created 1
ReferenceEntity created 1
Figure created 1
CrosslinkedResidue created 1
EntityFunctionalStatus created 1
AbstractModifiedResidue created 1
ReferenceDatabase created 1
NonsenseMutation created 1
FragmentReplacedModification created 1
RegulationReference created 1
ChemicalDrug created 1
Regulation created 1
CatalystActivityReference created 1
TranslationalModification created 1
ControlledVocabulary created 1
ProteinDrug created 1
DefinedSet created 1
Depolymerisation created 1
ReferenceRNASequence created 1
RetractionStatus created 1
StableIdentifier created 1
ReferenceSequence created 1
CellLineagePath created 1
PsiMod created 1
_Deleted created 1
StableIdentifierHistory created 1
ReviewStatus created 1
ReferenceMolecule created 1
FragmentModification created 1
ControlReference created 1
InterChainCrosslinkedResidue created 1
CatalystActivity created 1
InteractionEvent created 1
NegativeGeneExpressionRegulation created 1
Event created 1
DatabaseIdentifier created 1
Drug created 1
CellDevelopmentStep created 1
CandidateSet created 1
IntraChainCrosslinkedResidue created 1
GenomeEncodedEntity created 1
Summation created 1
Polymer created 1
CellLineagePath internalReviewed +
Event internalReviewed +
Pathway internalReviewed +
Reaction internalReviewed +
Polymerisation internalReviewed +
Depolymerisation internalReviewed +
BlackBoxEvent internalReviewed +
InteractionEvent internalReviewed +
FailedReaction internalReviewed +
ReactionlikeEvent internalReviewed +
CellDevelopmentStep internalReviewed +
FailedReaction structureModified +
ReactionlikeEvent structureModified +
CellDevelopmentStep structureModified +
Pathway structureModified +
Event structureModified +
CellLineagePath structureModified +
Polymerisation structureModified +
Reaction structureModified +
Depolymerisation structureModified +
InteractionEvent structureModified +
BlackBoxEvent structureModified +
SimpleEntity revised +
Cell revised +
RNADrug revised +
PhysicalEntity revised +
FailedReaction revised +
BlackBoxEvent revised +
Depolymerisation revised +
EntitySet revised +
Polymerisation revised +
OtherEntity revised +
Pathway revised +
CellLineagePath revised +
Drug revised +
CellDevelopmentStep revised +
ReactionlikeEvent revised +
ChemicalDrug revised +
EntityWithAccessionedSequence revised +
GenomeEncodedEntity revised +
Polymer revised +
ProteinDrug revised +
CandidateSet revised +
DefinedSet revised +
InteractionEvent revised +
Reaction revised +
Complex revised +
Event revised +
DefinedSet authored 1
CandidateSet authored 1
ProteinDrug authored 1
Polymer authored 1
EntityWithAccessionedSequence authored 1
GenomeEncodedEntity authored 1
ChemicalDrug authored 1
ReactionlikeEvent authored +
CellDevelopmentStep authored +
Drug authored 1
Event authored +
Reaction authored +
Complex authored 1
InteractionEvent authored +
FailedReaction authored +
PhysicalEntity authored 1
RNADrug authored 1
Cell authored 1
SimpleEntity authored 1
CellLineagePath authored +
Pathway authored +
OtherEntity authored 1
Polymerisation authored +
EntitySet authored 1
Depolymerisation authored +
BlackBoxEvent authored +
_Deleted replacementInstances +
Complex reviewed +
Reaction reviewed +
Event reviewed +
InteractionEvent reviewed +
Polymer reviewed +
EntityWithAccessionedSequence reviewed +
GenomeEncodedEntity reviewed +
CandidateSet reviewed +
ProteinDrug reviewed +
DefinedSet reviewed +
Drug reviewed +
CellDevelopmentStep reviewed +
ChemicalDrug reviewed +
ReactionlikeEvent reviewed +
Polymerisation reviewed +
Pathway reviewed +
CellLineagePath reviewed +
OtherEntity reviewed +
BlackBoxEvent reviewed +
EntitySet reviewed +
Depolymerisation reviewed +
PhysicalEntity reviewed +
RNADrug reviewed +
FailedReaction reviewed +
Cell reviewed +
SimpleEntity reviewed +
Taxon modified +
Pathway modified +
DrugActionType modified +
OtherEntity modified +
Person modified +
Polymerisation modified +
Requirement modified +
FrontPage modified +
EntitySet modified +
Disease modified +
ReferenceTherapeutic modified +
_Release modified +
FailedReaction modified +
GO_MolecularFunction modified +
PhysicalEntity modified +
ReactionType modified +
Cell modified +
GO_CellularComponent modified +
DatabaseObject modified +
FunctionalStatusType modified +
Reaction modified +
Book modified +
ReferenceGeneProduct modified +
URL modified +
_UpdateTracker modified +
EvidenceType modified +
Anatomy modified +
StableIdentifierReleaseStatus modified +
NegativePrecedingEvent modified +
ReferenceGroup modified +
InstanceEdit modified +
MarkerReference modified +
PositiveRegulation modified +
PathwayDiagram modified +
ModifiedNucleotide modified +
GroupModifiedResidue modified +
SequenceOntology modified +
Compartment modified +
GO_BiologicalProcess modified +
CellType modified +
NegativeRegulation modified +
PhysicalEntityCellType modified +
NegativePrecedingEventReason modified +
LiteratureReference modified +
Complex modified +
TranscriptionalModification modified +
DeletedControlledVocabulary modified +
ExternalOntology modified +
EntityWithAccessionedSequence modified +
ReactionlikeEvent modified +
ReferenceDNASequence modified +
Species modified +
ModifiedResidue modified +
GeneticallyModifiedResidue modified +
CellLineagePath modified +
ReferenceSequence modified +
StableIdentifier modified +
RetractionStatus modified +
_Deleted modified +
PsiMod modified +
Depolymerisation modified +
ReferenceRNASequence modified +
ReferenceMolecule modified +
ControlReference modified +
FragmentModification modified +
ReviewStatus modified +
StableIdentifierHistory modified +
NegativeGeneExpressionRegulation modified +
Event modified +
DatabaseIdentifier modified +
InterChainCrosslinkedResidue modified +
CatalystActivity modified +
InteractionEvent modified +
IntraChainCrosslinkedResidue modified +
CandidateSet modified +
Polymer modified +
GenomeEncodedEntity modified +
Summation modified +
Drug modified +
CellDevelopmentStep modified +
ReferenceIsoform modified +
FunctionalStatus modified +
PositiveGeneExpressionRegulation modified +
BlackBoxEvent modified +
Publication modified +
Affiliation modified +
Figure modified +
ReferenceEntity modified +
FragmentInsertionModification modified +
RNADrug modified +
ReplacedResidue modified +
SimpleEntity modified +
FragmentDeletionModification modified +
_DeletedInstance modified +
FragmentReplacedModification modified +
NonsenseMutation modified +
CrosslinkedResidue modified +
ReferenceDatabase modified +
AbstractModifiedResidue modified +
EntityFunctionalStatus modified +
ProteinDrug modified +
ControlledVocabulary modified +
DefinedSet modified +
ChemicalDrug modified +
RegulationReference modified +
TranslationalModification modified +
CatalystActivityReference modified +
Regulation modified +
Drug edited +
CellDevelopmentStep edited +
ChemicalDrug edited +
ReactionlikeEvent edited +
Polymer edited +
GenomeEncodedEntity edited +
EntityWithAccessionedSequence edited +
DefinedSet edited +
CandidateSet edited +
ProteinDrug edited +
InteractionEvent edited +
Reaction edited +
Complex edited +
Event edited +
SimpleEntity edited +
Cell edited +
PhysicalEntity edited +
RNADrug edited +
FailedReaction edited +
BlackBoxEvent edited +
EntitySet edited +
Depolymerisation edited +
Polymerisation edited +
Pathway edited +
CellLineagePath edited +
OtherEntity edited +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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