Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
DatabaseObject created 1
GO_BiologicalProcess created 1
CandidateSet created 1
ReferenceEntity created 1
ReferenceRNASequence created 1
LiteratureReference created 1
Compartment created 1
FragmentDeletionModification created 1
Anatomy created 1
Affiliation created 1
GeneticallyModifiedResidue created 1
TranslationalModification created 1
FragmentModification created 1
NegativeGeneExpressionRegulation created 1
URL created 1
StableIdentifierHistory created 1
PositiveGeneExpressionRegulation created 1
ReferenceDatabase created 1
SimpleEntity created 1
PositiveRegulation created 1
CatalystActivity created 1
Summation created 1
Polymerisation created 1
FailedReaction created 1
ReplacedResidue created 1
PathwayDiagram created 1
Depolymerisation created 1
AbstractModifiedResidue created 1
_Release created 1
ReferenceIsoform created 1
DatabaseIdentifier created 1
MarkerReference created 1
Drug created 1
OtherEntity created 1
ReviewStatus created 1
PhysicalEntity created 1
ReactionlikeEvent created 1
EntityFunctionalStatus created 1
Publication created 1
RegulationReference created 1
RNADrug created 1
ReactionType created 1
Book created 1
DeletedControlledVocabulary created 1
EntityWithAccessionedSequence created 1
IntraChainCrosslinkedResidue created 1
Taxon created 1
_UpdateTracker created 1
Polymer created 1
DrugActionType created 1
_Deleted created 1
GroupModifiedResidue created 1
SequenceOntology created 1
PsiMod created 1
InstanceEdit created 1
ModifiedNucleotide created 1
ControlledVocabulary created 1
NonsenseMutation created 1
ReferenceTherapeutic created 1
NegativePrecedingEventReason created 1
Regulation created 1
FrontPage created 1
Figure created 1
PhysicalEntityCellType created 1
GO_MolecularFunction created 1
GO_CellularComponent created 1
ModifiedResidue created 1
GenomeEncodedEntity created 1
CellType created 1
Reaction created 1
InteractionEvent created 1
FragmentReplacedModification created 1
StableIdentifier created 1
Requirement created 1
InterChainCrosslinkedResidue created 1
BlackBoxEvent created 1
NegativePrecedingEvent created 1
ReferenceGroup created 1
Cell created 1
ReferenceDNASequence created 1
ChemicalDrug created 1
RetractionStatus created 1
ControlReference created 1
CellLineagePath created 1
CellDevelopmentStep created 1
Event created 1
FragmentInsertionModification created 1
ReferenceGeneProduct created 1
ReferenceSequence created 1
TranscriptionalModification created 1
ProteinDrug created 1
CatalystActivityReference created 1
Species created 1
ExternalOntology created 1
Complex created 1
CrosslinkedResidue created 1
EntitySet created 1
_DeletedInstance created 1
Person created 1
NegativeRegulation created 1
Disease created 1
StableIdentifierReleaseStatus created 1
DefinedSet created 1
Pathway created 1
FunctionalStatusType created 1
ReferenceMolecule created 1
EvidenceType created 1
FunctionalStatus created 1
_Deleted replacementInstances +
Pathway structureModified +
Reaction structureModified +
BlackBoxEvent structureModified +
ReactionlikeEvent structureModified +
Depolymerisation structureModified +
FailedReaction structureModified +
Event structureModified +
Polymerisation structureModified +
InteractionEvent structureModified +
CellLineagePath structureModified +
CellDevelopmentStep structureModified +
ReviewStatus modified +
OtherEntity modified +
ReactionlikeEvent modified +
PhysicalEntity modified +
EntityFunctionalStatus modified +
ReferenceIsoform modified +
DatabaseIdentifier modified +
MarkerReference modified +
Drug modified +
IntraChainCrosslinkedResidue modified +
DrugActionType modified +
_Deleted modified +
_UpdateTracker modified +
Taxon modified +
Polymer modified +
RNADrug modified +
Publication modified +
RegulationReference modified +
EntityWithAccessionedSequence modified +
DeletedControlledVocabulary modified +
Book modified +
ReactionType modified +
Compartment modified +
FragmentDeletionModification modified +
Anatomy modified +
Affiliation modified +
ReferenceRNASequence modified +
ReferenceEntity modified +
LiteratureReference modified +
NegativeGeneExpressionRegulation modified +
FragmentModification modified +
GeneticallyModifiedResidue modified +
TranslationalModification modified +
DatabaseObject modified +
GO_BiologicalProcess modified +
CandidateSet modified +
Polymerisation modified +
FailedReaction modified +
CatalystActivity modified +
Summation modified +
_Release modified +
PathwayDiagram modified +
ReplacedResidue modified +
Depolymerisation modified +
AbstractModifiedResidue modified +
PositiveGeneExpressionRegulation modified +
URL modified +
StableIdentifierHistory modified +
PositiveRegulation modified +
SimpleEntity modified +
ReferenceDatabase modified +
Event modified +
FragmentInsertionModification modified +
TranscriptionalModification modified +
ReferenceGeneProduct modified +
ReferenceSequence modified +
ControlReference modified +
CellDevelopmentStep modified +
CellLineagePath modified +
ExternalOntology modified +
CatalystActivityReference modified +
ProteinDrug modified +
Species modified +
ReferenceDNASequence modified +
ChemicalDrug modified +
RetractionStatus modified +
EvidenceType modified +
ReferenceMolecule modified +
FunctionalStatus modified +
EntitySet modified +
NegativeRegulation modified +
Person modified +
_DeletedInstance modified +
Complex modified +
CrosslinkedResidue modified +
StableIdentifierReleaseStatus modified +
Pathway modified +
DefinedSet modified +
FunctionalStatusType modified +
Disease modified +
NegativePrecedingEventReason modified +
Regulation modified +
NonsenseMutation modified +
ControlledVocabulary modified +
ReferenceTherapeutic modified +
FrontPage modified +
InstanceEdit modified +
ModifiedNucleotide modified +
GroupModifiedResidue modified +
SequenceOntology modified +
PsiMod modified +
FragmentReplacedModification modified +
StableIdentifier modified +
InteractionEvent modified +
NegativePrecedingEvent modified +
ReferenceGroup modified +
Cell modified +
InterChainCrosslinkedResidue modified +
Requirement modified +
BlackBoxEvent modified +
GO_MolecularFunction modified +
PhysicalEntityCellType modified +
Figure modified +
CellType modified +
Reaction modified +
GO_CellularComponent modified +
GenomeEncodedEntity modified +
ModifiedResidue modified +
InteractionEvent internalReviewed +
CellDevelopmentStep internalReviewed +
CellLineagePath internalReviewed +
Event internalReviewed +
Polymerisation internalReviewed +
FailedReaction internalReviewed +
Depolymerisation internalReviewed +
ReactionlikeEvent internalReviewed +
BlackBoxEvent internalReviewed +
Pathway internalReviewed +
Reaction internalReviewed +
Cell reviewed +
Depolymerisation reviewed +
Polymer reviewed +
BlackBoxEvent reviewed +
Polymerisation reviewed +
FailedReaction reviewed +
InteractionEvent reviewed +
SimpleEntity reviewed +
DefinedSet reviewed +
Reaction reviewed +
Pathway reviewed +
EntityWithAccessionedSequence reviewed +
GenomeEncodedEntity reviewed +
EntitySet reviewed +
RNADrug reviewed +
Complex reviewed +
ProteinDrug reviewed +
PhysicalEntity reviewed +
ReactionlikeEvent reviewed +
Event reviewed +
CellLineagePath reviewed +
CellDevelopmentStep reviewed +
OtherEntity reviewed +
Drug reviewed +
CandidateSet reviewed +
ChemicalDrug reviewed +
Cell authored 1
Depolymerisation authored +
Polymer authored 1
BlackBoxEvent authored +
Polymerisation authored +
FailedReaction authored +
InteractionEvent authored +
SimpleEntity authored 1
Reaction authored +
Pathway authored +
EntityWithAccessionedSequence authored 1
DefinedSet authored 1
GenomeEncodedEntity authored 1
EntitySet authored 1
RNADrug authored 1
Complex authored 1
ProteinDrug authored 1
PhysicalEntity authored 1
ReactionlikeEvent authored +
Event authored +
CellLineagePath authored +
CellDevelopmentStep authored +
OtherEntity authored 1
CandidateSet authored 1
Drug authored 1
ChemicalDrug authored 1
Complex edited +
EntitySet edited +
RNADrug edited +
GenomeEncodedEntity edited +
SimpleEntity edited +
Reaction edited +
EntityWithAccessionedSequence edited +
Pathway edited +
DefinedSet edited +
InteractionEvent edited +
Polymerisation edited +
FailedReaction edited +
Depolymerisation edited +
BlackBoxEvent edited +
Polymer edited +
Cell edited +
ChemicalDrug edited +
Drug edited +
CandidateSet edited +
CellDevelopmentStep edited +
CellLineagePath edited +
OtherEntity edited +
Event edited +
ProteinDrug edited +
ReactionlikeEvent edited +
PhysicalEntity edited +
ChemicalDrug revised +
Drug revised +
CandidateSet revised +
Event revised +
CellLineagePath revised +
CellDevelopmentStep revised +
OtherEntity revised +
ProteinDrug revised +
ReactionlikeEvent revised +
PhysicalEntity revised +
EntitySet revised +
RNADrug revised +
Complex revised +
SimpleEntity revised +
EntityWithAccessionedSequence revised +
Reaction revised +
Pathway revised +
DefinedSet revised +
GenomeEncodedEntity revised +
Polymerisation revised +
FailedReaction revised +
InteractionEvent revised +
Cell revised +
Depolymerisation revised +
BlackBoxEvent revised +
Polymer revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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