Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
ReferenceMolecule created 1
Summation created 1
FrontPage created 1
PathwayDiagram created 1
EvidenceType created 1
Taxon created 1
FunctionalStatus created 1
LiteratureReference created 1
StableIdentifier created 1
Drug created 1
InterChainCrosslinkedResidue created 1
ControlReference created 1
ModifiedNucleotide created 1
EntitySet created 1
ReferenceTherapeutic created 1
OtherEntity created 1
Book created 1
_DeletedInstance created 1
FunctionalStatusType created 1
CellLineagePath created 1
ExternalOntology created 1
IntraChainCrosslinkedResidue created 1
Anatomy created 1
DatabaseObject created 1
FailedReaction created 1
ReactionlikeEvent created 1
PhysicalEntity created 1
Species created 1
Publication created 1
RetractionStatus created 1
Person created 1
NegativeGeneExpressionRegulation created 1
Affiliation created 1
ReferenceSequence created 1
URL created 1
CellDevelopmentStep created 1
EntityFunctionalStatus created 1
_UpdateTracker created 1
ReferenceGeneProduct created 1
ControlledVocabulary created 1
RNADrug created 1
ReferenceIsoform created 1
DatabaseIdentifier created 1
NegativeRegulation created 1
FragmentModification created 1
ProteinDrug created 1
ReviewStatus created 1
ReferenceGroup created 1
GroupModifiedResidue created 1
Figure created 1
InstanceEdit created 1
FragmentDeletionModification created 1
ReferenceRNASequence created 1
RegulationReference created 1
DeletedControlledVocabulary created 1
FragmentInsertionModification created 1
SequenceOntology created 1
CellType created 1
TranslationalModification created 1
StableIdentifierReleaseStatus created 1
TranscriptionalModification created 1
Cell created 1
ModifiedResidue created 1
GO_CellularComponent created 1
Pathway created 1
DefinedSet created 1
ReplacedResidue created 1
GO_BiologicalProcess created 1
EntityWithAccessionedSequence created 1
StableIdentifierHistory created 1
Regulation created 1
MarkerReference created 1
CatalystActivityReference created 1
Polymerisation created 1
NonsenseMutation created 1
Depolymerisation created 1
CandidateSet created 1
Reaction created 1
NegativePrecedingEventReason created 1
GO_MolecularFunction created 1
ChemicalDrug created 1
CrosslinkedResidue created 1
PositiveRegulation created 1
ReferenceDNASequence created 1
DrugActionType created 1
SimpleEntity created 1
PsiMod created 1
Event created 1
Requirement created 1
FragmentReplacedModification created 1
AbstractModifiedResidue created 1
PositiveGeneExpressionRegulation created 1
Complex created 1
Disease created 1
_Deleted created 1
ReactionType created 1
ReferenceEntity created 1
_Release created 1
Polymer created 1
InteractionEvent created 1
CatalystActivity created 1
GeneticallyModifiedResidue created 1
ReferenceDatabase created 1
NegativePrecedingEvent created 1
GenomeEncodedEntity created 1
PhysicalEntityCellType created 1
BlackBoxEvent created 1
Compartment created 1
Polymer reviewed +
Polymerisation reviewed +
InteractionEvent reviewed +
RNADrug reviewed +
CandidateSet reviewed +
Depolymerisation reviewed +
CellDevelopmentStep reviewed +
EntityWithAccessionedSequence reviewed +
EntitySet reviewed +
OtherEntity reviewed +
ChemicalDrug reviewed +
ProteinDrug reviewed +
BlackBoxEvent reviewed +
ReactionlikeEvent reviewed +
FailedReaction reviewed +
Reaction reviewed +
GenomeEncodedEntity reviewed +
CellLineagePath reviewed +
Event reviewed +
PhysicalEntity reviewed +
SimpleEntity reviewed +
Drug reviewed +
Cell reviewed +
Complex reviewed +
Pathway reviewed +
DefinedSet reviewed +
OtherEntity edited +
CellDevelopmentStep edited +
EntityWithAccessionedSequence edited +
EntitySet edited +
RNADrug edited +
Depolymerisation edited +
CandidateSet edited +
Polymerisation edited +
InteractionEvent edited +
Polymer edited +
GenomeEncodedEntity edited +
CellLineagePath edited +
Reaction edited +
ReactionlikeEvent edited +
FailedReaction edited +
ProteinDrug edited +
ChemicalDrug edited +
BlackBoxEvent edited +
SimpleEntity edited +
PhysicalEntity edited +
Event edited +
Complex edited +
Pathway edited +
DefinedSet edited +
Drug edited +
Cell edited +
_Deleted replacementInstances +
CellDevelopmentStep structureModified +
Depolymerisation structureModified +
InteractionEvent structureModified +
Polymerisation structureModified +
Event structureModified +
CellLineagePath structureModified +
Reaction structureModified +
Pathway structureModified +
ReactionlikeEvent structureModified +
FailedReaction structureModified +
BlackBoxEvent structureModified +
Event authored +
PhysicalEntity authored 1
SimpleEntity authored 1
Drug authored 1
Cell authored 1
Complex authored 1
Pathway authored +
DefinedSet authored 1
Polymer authored 1
InteractionEvent authored +
Polymerisation authored +
RNADrug authored 1
Depolymerisation authored +
CandidateSet authored 1
CellDevelopmentStep authored +
EntityWithAccessionedSequence authored 1
EntitySet authored 1
OtherEntity authored 1
ProteinDrug authored 1
ChemicalDrug authored 1
BlackBoxEvent authored +
ReactionlikeEvent authored +
FailedReaction authored +
Reaction authored +
GenomeEncodedEntity authored 1
CellLineagePath authored +
BlackBoxEvent internalReviewed +
Pathway internalReviewed +
ReactionlikeEvent internalReviewed +
FailedReaction internalReviewed +
Reaction internalReviewed +
CellLineagePath internalReviewed +
Polymerisation internalReviewed +
InteractionEvent internalReviewed +
Event internalReviewed +
Depolymerisation internalReviewed +
CellDevelopmentStep internalReviewed +
ReferenceMolecule modified +
Summation modified +
FrontPage modified +
PathwayDiagram modified +
Taxon modified +
EvidenceType modified +
FunctionalStatus modified +
LiteratureReference modified +
StableIdentifier modified +
Drug modified +
InterChainCrosslinkedResidue modified +
ModifiedNucleotide modified +
ControlReference modified +
ReferenceTherapeutic modified +
EntitySet modified +
OtherEntity modified +
Book modified +
_DeletedInstance modified +
FunctionalStatusType modified +
CellLineagePath modified +
ExternalOntology modified +
IntraChainCrosslinkedResidue modified +
Anatomy modified +
DatabaseObject modified +
FailedReaction modified +
ReactionlikeEvent modified +
PhysicalEntity modified +
Species modified +
RetractionStatus modified +
Publication modified +
Person modified +
NegativeGeneExpressionRegulation modified +
Affiliation modified +
URL modified +
ReferenceSequence modified +
CellDevelopmentStep modified +
EntityFunctionalStatus modified +
_UpdateTracker modified +
ReferenceGeneProduct modified +
ControlledVocabulary modified +
RNADrug modified +
ReferenceIsoform modified +
DatabaseIdentifier modified +
NegativeRegulation modified +
ProteinDrug modified +
FragmentModification modified +
ReviewStatus modified +
ReferenceGroup modified +
GroupModifiedResidue modified +
InstanceEdit modified +
Figure modified +
FragmentDeletionModification modified +
RegulationReference modified +
DeletedControlledVocabulary modified +
ReferenceRNASequence modified +
FragmentInsertionModification modified +
SequenceOntology modified +
CellType modified +
StableIdentifierReleaseStatus modified +
TranslationalModification modified +
TranscriptionalModification modified +
Cell modified +
ModifiedResidue modified +
GO_CellularComponent modified +
ReplacedResidue modified +
Pathway modified +
DefinedSet modified +
GO_BiologicalProcess modified +
EntityWithAccessionedSequence modified +
MarkerReference modified +
Regulation modified +
StableIdentifierHistory modified +
CatalystActivityReference modified +
Polymerisation modified +
NonsenseMutation modified +
Depolymerisation modified +
CandidateSet modified +
Reaction modified +
NegativePrecedingEventReason modified +
GO_MolecularFunction modified +
ChemicalDrug modified +
CrosslinkedResidue modified +
PositiveRegulation modified +
ReferenceDNASequence modified +
DrugActionType modified +
SimpleEntity modified +
PsiMod modified +
Event modified +
FragmentReplacedModification modified +
Requirement modified +
AbstractModifiedResidue modified +
PositiveGeneExpressionRegulation modified +
Disease modified +
Complex modified +
_Deleted modified +
ReactionType modified +
ReferenceEntity modified +
_Release modified +
CatalystActivity modified +
InteractionEvent modified +
Polymer modified +
GeneticallyModifiedResidue modified +
ReferenceDatabase modified +
GenomeEncodedEntity modified +
PhysicalEntityCellType modified +
NegativePrecedingEvent modified +
BlackBoxEvent modified +
Compartment modified +
Complex revised +
DefinedSet revised +
Pathway revised +
Drug revised +
Cell revised +
SimpleEntity revised +
PhysicalEntity revised +
Event revised +
GenomeEncodedEntity revised +
CellLineagePath revised +
Reaction revised +
FailedReaction revised +
ReactionlikeEvent revised +
ProteinDrug revised +
BlackBoxEvent revised +
ChemicalDrug revised +
OtherEntity revised +
CellDevelopmentStep revised +
EntitySet revised +
EntityWithAccessionedSequence revised +
RNADrug revised +
CandidateSet revised +
Depolymerisation revised +
Polymer revised +
InteractionEvent revised +
Polymerisation revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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