Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
TranslationalModification created 1
DatabaseObject created 1
ReviewStatus created 1
ReactionlikeEvent created 1
Compartment created 1
DeletedControlledVocabulary created 1
Species created 1
GeneticallyModifiedResidue created 1
FunctionalStatus created 1
ChemicalDrug created 1
ReferenceDNASequence created 1
BlackBoxEvent created 1
ControlledVocabulary created 1
NegativePrecedingEventReason created 1
FragmentInsertionModification created 1
Book created 1
PsiMod created 1
CandidateSet created 1
ReferenceIsoform created 1
InstanceEdit created 1
Person created 1
FunctionalStatusType created 1
DrugActionType created 1
PhysicalEntity created 1
Polymerisation created 1
Reaction created 1
CatalystActivity created 1
DatabaseIdentifier created 1
NegativeRegulation created 1
StableIdentifier created 1
Taxon created 1
GO_MolecularFunction created 1
URL created 1
GenomeEncodedEntity created 1
_Deleted created 1
GO_BiologicalProcess created 1
Event created 1
Summation created 1
FragmentDeletionModification created 1
NegativePrecedingEvent created 1
ReferenceGroup created 1
ReferenceDatabase created 1
RegulationReference created 1
PhysicalEntityCellType created 1
Disease created 1
EntityWithAccessionedSequence created 1
_Release created 1
Polymer created 1
InteractionEvent created 1
ReferenceSequence created 1
Regulation created 1
Complex created 1
EntityFunctionalStatus created 1
NonsenseMutation created 1
Drug created 1
GO_CellularComponent created 1
MarkerReference created 1
Anatomy created 1
PathwayDiagram created 1
CellType created 1
ReferenceMolecule created 1
_UpdateTracker created 1
PositiveGeneExpressionRegulation created 1
GroupModifiedResidue created 1
RNADrug created 1
NegativeGeneExpressionRegulation created 1
PositiveRegulation created 1
CellLineagePath created 1
StableIdentifierReleaseStatus created 1
ReactionType created 1
ReferenceEntity created 1
FailedReaction created 1
EvidenceType created 1
RetractionStatus created 1
ReferenceTherapeutic created 1
_DeletedInstance created 1
OtherEntity created 1
Affiliation created 1
CellDevelopmentStep created 1
ExternalOntology created 1
ModifiedNucleotide created 1
SimpleEntity created 1
AbstractModifiedResidue created 1
ControlReference created 1
FrontPage created 1
ProteinDrug created 1
ReferenceGeneProduct created 1
ModifiedResidue created 1
TranscriptionalModification created 1
SequenceOntology created 1
CrosslinkedResidue created 1
StableIdentifierHistory created 1
FragmentModification created 1
LiteratureReference created 1
DefinedSet created 1
FragmentReplacedModification created 1
CatalystActivityReference created 1
InterChainCrosslinkedResidue created 1
Cell created 1
Publication created 1
IntraChainCrosslinkedResidue created 1
Figure created 1
Depolymerisation created 1
EntitySet created 1
ReferenceRNASequence created 1
Pathway created 1
Requirement created 1
ReplacedResidue created 1
PhysicalEntity modified +
Polymerisation modified +
Reaction modified +
CatalystActivity modified +
NegativePrecedingEventReason modified +
FragmentInsertionModification modified +
Book modified +
PsiMod modified +
CandidateSet modified +
ReferenceIsoform modified +
InstanceEdit modified +
Person modified +
FunctionalStatusType modified +
DrugActionType modified +
GeneticallyModifiedResidue modified +
FunctionalStatus modified +
ReferenceDNASequence modified +
ChemicalDrug modified +
BlackBoxEvent modified +
ControlledVocabulary modified +
TranslationalModification modified +
DatabaseObject modified +
Compartment modified +
ReactionlikeEvent modified +
ReviewStatus modified +
DeletedControlledVocabulary modified +
Species modified +
Regulation modified +
ReferenceSequence modified +
Complex modified +
NonsenseMutation modified +
EntityFunctionalStatus modified +
Drug modified +
RegulationReference modified +
PhysicalEntityCellType modified +
Disease modified +
EntityWithAccessionedSequence modified +
Polymer modified +
_Release modified +
InteractionEvent modified +
Event modified +
FragmentDeletionModification modified +
Summation modified +
NegativePrecedingEvent modified +
ReferenceDatabase modified +
ReferenceGroup modified +
NegativeRegulation modified +
DatabaseIdentifier modified +
StableIdentifier modified +
Taxon modified +
GO_MolecularFunction modified +
URL modified +
GenomeEncodedEntity modified +
_Deleted modified +
GO_BiologicalProcess modified +
ReferenceTherapeutic modified +
GroupModifiedResidue modified +
RNADrug modified +
NegativeGeneExpressionRegulation modified +
CellLineagePath modified +
PositiveRegulation modified +
StableIdentifierReleaseStatus modified +
ReactionType modified +
ReferenceEntity modified +
FailedReaction modified +
EvidenceType modified +
RetractionStatus modified +
CellType modified +
ReferenceMolecule modified +
_UpdateTracker modified +
PositiveGeneExpressionRegulation modified +
GO_CellularComponent modified +
MarkerReference modified +
Anatomy modified +
PathwayDiagram modified +
IntraChainCrosslinkedResidue modified +
Figure modified +
Depolymerisation modified +
ReferenceRNASequence modified +
EntitySet modified +
Pathway modified +
Requirement modified +
ReplacedResidue modified +
CrosslinkedResidue modified +
StableIdentifierHistory modified +
FragmentModification modified +
LiteratureReference modified +
DefinedSet modified +
FragmentReplacedModification modified +
CatalystActivityReference modified +
Publication modified +
InterChainCrosslinkedResidue modified +
Cell modified +
FrontPage modified +
ProteinDrug modified +
ReferenceGeneProduct modified +
TranscriptionalModification modified +
ModifiedResidue modified +
SequenceOntology modified +
OtherEntity modified +
_DeletedInstance modified +
Affiliation modified +
ModifiedNucleotide modified +
ExternalOntology modified +
CellDevelopmentStep modified +
SimpleEntity modified +
ControlReference modified +
AbstractModifiedResidue modified +
_Deleted replacementInstances +
InteractionEvent authored +
Cell authored 1
Polymer authored 1
FailedReaction authored +
EntityWithAccessionedSequence authored 1
DefinedSet authored 1
CellLineagePath authored +
CandidateSet authored 1
RNADrug authored 1
Drug authored 1
Polymerisation authored +
Pathway authored +
Reaction authored +
Complex authored 1
EntitySet authored 1
Depolymerisation authored +
PhysicalEntity authored 1
GenomeEncodedEntity authored 1
SimpleEntity authored 1
CellDevelopmentStep authored +
ReactionlikeEvent authored +
OtherEntity authored 1
BlackBoxEvent authored +
ChemicalDrug authored 1
ProteinDrug authored 1
Event authored +
OtherEntity edited +
CellDevelopmentStep edited +
ReactionlikeEvent edited +
SimpleEntity edited +
GenomeEncodedEntity edited +
Event edited +
ChemicalDrug edited +
ProteinDrug edited +
BlackBoxEvent edited +
RNADrug edited +
DefinedSet edited +
CellLineagePath edited +
CandidateSet edited +
InteractionEvent edited +
Cell edited +
Polymer edited +
FailedReaction edited +
EntityWithAccessionedSequence edited +
Depolymerisation edited +
PhysicalEntity edited +
Complex edited +
EntitySet edited +
Polymerisation edited +
Pathway edited +
Reaction edited +
Drug edited +
RNADrug revised +
DefinedSet revised +
CandidateSet revised +
CellLineagePath revised +
Cell revised +
InteractionEvent revised +
Polymer revised +
FailedReaction revised +
EntityWithAccessionedSequence revised +
PhysicalEntity revised +
Depolymerisation revised +
Complex revised +
EntitySet revised +
Reaction revised +
Pathway revised +
Polymerisation revised +
Drug revised +
OtherEntity revised +
CellDevelopmentStep revised +
ReactionlikeEvent revised +
SimpleEntity revised +
GenomeEncodedEntity revised +
Event revised +
ChemicalDrug revised +
ProteinDrug revised +
BlackBoxEvent revised +
Event reviewed +
ChemicalDrug reviewed +
ProteinDrug reviewed +
BlackBoxEvent reviewed +
OtherEntity reviewed +
CellDevelopmentStep reviewed +
ReactionlikeEvent reviewed +
SimpleEntity reviewed +
GenomeEncodedEntity reviewed +
Depolymerisation reviewed +
PhysicalEntity reviewed +
Complex reviewed +
EntitySet reviewed +
Polymerisation reviewed +
Pathway reviewed +
Reaction reviewed +
Drug reviewed +
RNADrug reviewed +
DefinedSet reviewed +
CellLineagePath reviewed +
CandidateSet reviewed +
InteractionEvent reviewed +
Cell reviewed +
Polymer reviewed +
EntityWithAccessionedSequence reviewed +
FailedReaction reviewed +
Event internalReviewed +
Depolymerisation internalReviewed +
Pathway internalReviewed +
Polymerisation internalReviewed +
Reaction internalReviewed +
BlackBoxEvent internalReviewed +
ReactionlikeEvent internalReviewed +
CellDevelopmentStep internalReviewed +
FailedReaction internalReviewed +
InteractionEvent internalReviewed +
CellLineagePath internalReviewed +
CellLineagePath structureModified +
FailedReaction structureModified +
InteractionEvent structureModified +
ReactionlikeEvent structureModified +
CellDevelopmentStep structureModified +
BlackBoxEvent structureModified +
Pathway structureModified +
Polymerisation structureModified +
Reaction structureModified +
Event structureModified +
Depolymerisation structureModified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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