Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
GenomeEncodedEntity authored 1
EntityWithAccessionedSequence authored 1
EntitySet authored 1
Event authored +
Depolymerisation authored +
Complex authored 1
ChemicalDrug authored 1
Cell authored 1
Reaction authored +
InteractionEvent authored +
BlackBoxEvent authored +
CandidateSet authored 1
OtherEntity authored 1
Polymer authored 1
CellLineagePath authored +
CellDevelopmentStep authored +
FailedReaction authored +
ProteinDrug authored 1
PhysicalEntity authored 1
DefinedSet authored 1
ReactionlikeEvent authored +
Polymerisation authored +
SimpleEntity authored 1
RNADrug authored 1
Drug authored 1
Pathway authored +
CellLineagePath structureModified +
CellDevelopmentStep structureModified +
Pathway structureModified +
FailedReaction structureModified +
BlackBoxEvent structureModified +
Reaction structureModified +
InteractionEvent structureModified +
Depolymerisation structureModified +
Polymerisation structureModified +
Event structureModified +
ReactionlikeEvent structureModified +
DrugActionType created 1
Book created 1
NonsenseMutation created 1
ChemicalDrug created 1
Complex created 1
Taxon created 1
PositiveGeneExpressionRegulation created 1
Requirement created 1
DeletedControlledVocabulary created 1
NegativeGeneExpressionRegulation created 1
GO_BiologicalProcess created 1
CandidateSet created 1
PhysicalEntityCellType created 1
ReactionlikeEvent created 1
Affiliation created 1
ReactionType created 1
RNADrug created 1
Polymerisation created 1
ExternalOntology created 1
URL created 1
ReferenceGroup created 1
ReferenceSequence created 1
PositiveRegulation created 1
FrontPage created 1
StableIdentifierReleaseStatus created 1
LiteratureReference created 1
FragmentDeletionModification created 1
Summation created 1
RegulationReference created 1
_Deleted created 1
ReferenceMolecule created 1
ReviewStatus created 1
ReferenceTherapeutic created 1
Reaction created 1
FunctionalStatus created 1
FailedReaction created 1
CellDevelopmentStep created 1
CellType created 1
DatabaseIdentifier created 1
OtherEntity created 1
PhysicalEntity created 1
ProteinDrug created 1
ReferenceGeneProduct created 1
Compartment created 1
ControlReference created 1
EntitySet created 1
_UpdateTracker created 1
GO_CellularComponent created 1
Person created 1
Figure created 1
Species created 1
GeneticallyModifiedResidue created 1
TranscriptionalModification created 1
ReferenceDNASequence created 1
MarkerReference created 1
InteractionEvent created 1
SequenceOntology created 1
Disease created 1
ReferenceDatabase created 1
CatalystActivity created 1
PsiMod created 1
ReplacedResidue created 1
FragmentModification created 1
ReferenceEntity created 1
DefinedSet created 1
NegativePrecedingEvent created 1
RetractionStatus created 1
_DeletedInstance created 1
GroupModifiedResidue created 1
Anatomy created 1
SimpleEntity created 1
ReferenceIsoform created 1
StableIdentifier created 1
ModifiedResidue created 1
EvidenceType created 1
PathwayDiagram created 1
InstanceEdit created 1
Pathway created 1
ModifiedNucleotide created 1
_Release created 1
Event created 1
EntityWithAccessionedSequence created 1
GenomeEncodedEntity created 1
CrosslinkedResidue created 1
FragmentInsertionModification created 1
Publication created 1
Depolymerisation created 1
BlackBoxEvent created 1
NegativePrecedingEventReason created 1
DatabaseObject created 1
Cell created 1
Polymer created 1
CellLineagePath created 1
ReferenceRNASequence created 1
FragmentReplacedModification created 1
InterChainCrosslinkedResidue created 1
TranslationalModification created 1
IntraChainCrosslinkedResidue created 1
GO_MolecularFunction created 1
ControlledVocabulary created 1
EntityFunctionalStatus created 1
Regulation created 1
AbstractModifiedResidue created 1
StableIdentifierHistory created 1
NegativeRegulation created 1
Drug created 1
CatalystActivityReference created 1
FunctionalStatusType created 1
ReactionlikeEvent internalReviewed +
Event internalReviewed +
Depolymerisation internalReviewed +
Polymerisation internalReviewed +
InteractionEvent internalReviewed +
Reaction internalReviewed +
BlackBoxEvent internalReviewed +
Pathway internalReviewed +
FailedReaction internalReviewed +
CellDevelopmentStep internalReviewed +
CellLineagePath internalReviewed +
CatalystActivity modified +
PsiMod modified +
FragmentModification modified +
ReplacedResidue modified +
ReferenceEntity modified +
MarkerReference modified +
Disease modified +
SequenceOntology modified +
InteractionEvent modified +
ReferenceDatabase modified +
GeneticallyModifiedResidue modified +
TranscriptionalModification modified +
ReferenceDNASequence modified +
_UpdateTracker modified +
GO_CellularComponent modified +
EntitySet modified +
Person modified +
Figure modified +
Species modified +
Pathway modified +
ModifiedNucleotide modified +
_Release modified +
PathwayDiagram modified +
InstanceEdit modified +
Anatomy modified +
GroupModifiedResidue modified +
ModifiedResidue modified +
ReferenceIsoform modified +
StableIdentifier modified +
SimpleEntity modified +
EvidenceType modified +
DefinedSet modified +
NegativePrecedingEvent modified +
RetractionStatus modified +
_DeletedInstance modified +
CellLineagePath modified +
Polymer modified +
ReferenceRNASequence modified +
FragmentReplacedModification modified +
InterChainCrosslinkedResidue modified +
BlackBoxEvent modified +
NegativePrecedingEventReason modified +
DatabaseObject modified +
Cell modified +
FragmentInsertionModification modified +
CrosslinkedResidue modified +
Publication modified +
Depolymerisation modified +
Event modified +
EntityWithAccessionedSequence modified +
GenomeEncodedEntity modified +
FunctionalStatusType modified +
EntityFunctionalStatus modified +
Regulation modified +
AbstractModifiedResidue modified +
StableIdentifierHistory modified +
NegativeRegulation modified +
Drug modified +
CatalystActivityReference modified +
GO_MolecularFunction modified +
ControlledVocabulary modified +
TranslationalModification modified +
IntraChainCrosslinkedResidue modified +
GO_BiologicalProcess modified +
CandidateSet modified +
NegativeGeneExpressionRegulation modified +
NonsenseMutation modified +
Complex modified +
ChemicalDrug modified +
Taxon modified +
DeletedControlledVocabulary modified +
PositiveGeneExpressionRegulation modified +
Requirement modified +
DrugActionType modified +
Book modified +
URL modified +
ReferenceSequence modified +
ReferenceGroup modified +
PositiveRegulation modified +
FrontPage modified +
StableIdentifierReleaseStatus modified +
ReactionType modified +
RNADrug modified +
ExternalOntology modified +
Polymerisation modified +
ReactionlikeEvent modified +
PhysicalEntityCellType modified +
Affiliation modified +
FailedReaction modified +
CellDevelopmentStep modified +
FunctionalStatus modified +
CellType modified +
DatabaseIdentifier modified +
OtherEntity modified +
_Deleted modified +
ReviewStatus modified +
ReferenceMolecule modified +
ReferenceTherapeutic modified +
Reaction modified +
RegulationReference modified +
FragmentDeletionModification modified +
LiteratureReference modified +
Summation modified +
ControlReference modified +
ReferenceGeneProduct modified +
Compartment modified +
ProteinDrug modified +
PhysicalEntity modified +
Polymerisation edited +
RNADrug edited +
SimpleEntity edited +
PhysicalEntity edited +
ProteinDrug edited +
ReactionlikeEvent edited +
DefinedSet edited +
Pathway edited +
Drug edited +
Depolymerisation edited +
Complex edited +
ChemicalDrug edited +
EntityWithAccessionedSequence edited +
GenomeEncodedEntity edited +
EntitySet edited +
Event edited +
OtherEntity edited +
CandidateSet edited +
FailedReaction edited +
CellDevelopmentStep edited +
Polymer edited +
CellLineagePath edited +
InteractionEvent edited +
Cell edited +
Reaction edited +
BlackBoxEvent edited +
_Deleted replacementInstances +
Pathway reviewed +
Drug reviewed +
SimpleEntity reviewed +
RNADrug reviewed +
Polymerisation reviewed +
ReactionlikeEvent reviewed +
DefinedSet reviewed +
ProteinDrug reviewed +
PhysicalEntity reviewed +
CellLineagePath reviewed +
Polymer reviewed +
CellDevelopmentStep reviewed +
FailedReaction reviewed +
CandidateSet reviewed +
OtherEntity reviewed +
BlackBoxEvent reviewed +
Cell reviewed +
Reaction reviewed +
InteractionEvent reviewed +
ChemicalDrug reviewed +
Complex reviewed +
Depolymerisation reviewed +
EntitySet reviewed +
Event reviewed +
GenomeEncodedEntity reviewed +
EntityWithAccessionedSequence reviewed +
Event revised +
EntitySet revised +
EntityWithAccessionedSequence revised +
GenomeEncodedEntity revised +
ChemicalDrug revised +
Complex revised +
Depolymerisation revised +
BlackBoxEvent revised +
InteractionEvent revised +
Reaction revised +
Cell revised +
FailedReaction revised +
CellDevelopmentStep revised +
CellLineagePath revised +
Polymer revised +
OtherEntity revised +
CandidateSet revised +
ReactionlikeEvent revised +
DefinedSet revised +
ProteinDrug revised +
PhysicalEntity revised +
RNADrug revised +
SimpleEntity revised +
Polymerisation revised +
Drug revised +
Pathway revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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