Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'InstanceEdit'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances
Class name Attribute name Cardinality
BlackBoxEvent revised +
CellDevelopmentStep revised +
EntityWithAccessionedSequence revised +
Event revised +
GenomeEncodedEntity revised +
CandidateSet revised +
Reaction revised +
SimpleEntity revised +
Polymerisation revised +
OtherEntity revised +
FailedReaction revised +
InteractionEvent revised +
Pathway revised +
Complex revised +
EntitySet revised +
RNADrug revised +
ChemicalDrug revised +
Depolymerisation revised +
DefinedSet revised +
Polymer revised +
Drug revised +
ReactionlikeEvent revised +
ProteinDrug revised +
PhysicalEntity revised +
CellLineagePath revised +
Cell revised +
Polymerisation internalReviewed +
InteractionEvent internalReviewed +
FailedReaction internalReviewed +
Pathway internalReviewed +
CellLineagePath internalReviewed +
BlackBoxEvent internalReviewed +
CellDevelopmentStep internalReviewed +
Depolymerisation internalReviewed +
Event internalReviewed +
Reaction internalReviewed +
ReactionlikeEvent internalReviewed +
_Deleted replacementInstances +
TranscriptionalModification created 1
GroupModifiedResidue created 1
Complex created 1
CellType created 1
_Release created 1
ReferenceGroup created 1
ModifiedNucleotide created 1
GO_BiologicalProcess created 1
Publication created 1
ReviewStatus created 1
DatabaseObject created 1
EvidenceType created 1
NonsenseMutation created 1
InstanceEdit created 1
DrugActionType created 1
ReferenceRNASequence created 1
StableIdentifierReleaseStatus created 1
ReferenceSequence created 1
FragmentReplacedModification created 1
Polymer created 1
PositiveGeneExpressionRegulation created 1
StableIdentifierHistory created 1
FunctionalStatus created 1
FragmentInsertionModification created 1
RegulationReference created 1
ReactionType created 1
Summation created 1
Pathway created 1
Figure created 1
GenomeEncodedEntity created 1
CandidateSet created 1
PhysicalEntityCellType created 1
PositiveRegulation created 1
CellDevelopmentStep created 1
BlackBoxEvent created 1
_DeletedInstance created 1
FragmentModification created 1
ReferenceDatabase created 1
ControlReference created 1
MarkerReference created 1
CellLineagePath created 1
PhysicalEntity created 1
Cell created 1
Anatomy created 1
Book created 1
Species created 1
ReplacedResidue created 1
FrontPage created 1
ProteinDrug created 1
GeneticallyModifiedResidue created 1
Compartment created 1
ReferenceDNASequence created 1
Depolymerisation created 1
FailedReaction created 1
ModifiedResidue created 1
GO_CellularComponent created 1
ReferenceMolecule created 1
ReferenceIsoform created 1
DatabaseIdentifier created 1
DeletedControlledVocabulary created 1
Reaction created 1
RetractionStatus created 1
StableIdentifier created 1
EntityWithAccessionedSequence created 1
Disease created 1
AbstractModifiedResidue created 1
PsiMod created 1
GO_MolecularFunction created 1
Regulation created 1
CatalystActivity created 1
DefinedSet created 1
_Deleted created 1
PathwayDiagram created 1
Drug created 1
EntitySet created 1
FragmentDeletionModification created 1
ReferenceEntity created 1
Person created 1
RNADrug created 1
NegativeGeneExpressionRegulation created 1
URL created 1
ReferenceGeneProduct created 1
TranslationalModification created 1
ExternalOntology created 1
InteractionEvent created 1
NegativePrecedingEventReason created 1
SequenceOntology created 1
NegativePrecedingEvent created 1
SimpleEntity created 1
Polymerisation created 1
Affiliation created 1
IntraChainCrosslinkedResidue created 1
OtherEntity created 1
Event created 1
Taxon created 1
NegativeRegulation created 1
ReferenceTherapeutic created 1
InterChainCrosslinkedResidue created 1
LiteratureReference created 1
_UpdateTracker created 1
EntityFunctionalStatus created 1
FunctionalStatusType created 1
Requirement created 1
CatalystActivityReference created 1
ControlledVocabulary created 1
CrosslinkedResidue created 1
ReactionlikeEvent created 1
ChemicalDrug created 1
Polymer reviewed +
DefinedSet reviewed +
ReactionlikeEvent reviewed +
ProteinDrug reviewed +
Drug reviewed +
RNADrug reviewed +
EntitySet reviewed +
Depolymerisation reviewed +
ChemicalDrug reviewed +
Cell reviewed +
PhysicalEntity reviewed +
CellLineagePath reviewed +
CandidateSet reviewed +
GenomeEncodedEntity reviewed +
Event reviewed +
Reaction reviewed +
BlackBoxEvent reviewed +
CellDevelopmentStep reviewed +
EntityWithAccessionedSequence reviewed +
InteractionEvent reviewed +
FailedReaction reviewed +
Pathway reviewed +
Complex reviewed +
SimpleEntity reviewed +
OtherEntity reviewed +
Polymerisation reviewed +
CellDevelopmentStep structureModified +
BlackBoxEvent structureModified +
Depolymerisation structureModified +
Event structureModified +
Reaction structureModified +
ReactionlikeEvent structureModified +
Polymerisation structureModified +
FailedReaction structureModified +
InteractionEvent structureModified +
CellLineagePath structureModified +
Pathway structureModified +
OtherEntity authored 1
Polymerisation authored +
SimpleEntity authored 1
Pathway authored +
Complex authored 1
InteractionEvent authored +
FailedReaction authored +
EntityWithAccessionedSequence authored 1
BlackBoxEvent authored +
CellDevelopmentStep authored +
Reaction authored +
CandidateSet authored 1
Event authored +
GenomeEncodedEntity authored 1
Cell authored 1
CellLineagePath authored +
PhysicalEntity authored 1
ChemicalDrug authored 1
Depolymerisation authored +
RNADrug authored 1
EntitySet authored 1
ProteinDrug authored 1
ReactionlikeEvent authored +
Drug authored 1
Polymer authored 1
DefinedSet authored 1
CellLineagePath edited +
PhysicalEntity edited +
Cell edited +
ChemicalDrug edited +
Depolymerisation edited +
EntitySet edited +
RNADrug edited +
Drug edited +
ReactionlikeEvent edited +
ProteinDrug edited +
DefinedSet edited +
Polymer edited +
Polymerisation edited +
OtherEntity edited +
SimpleEntity edited +
Complex edited +
Pathway edited +
FailedReaction edited +
InteractionEvent edited +
EntityWithAccessionedSequence edited +
BlackBoxEvent edited +
CellDevelopmentStep edited +
Reaction edited +
GenomeEncodedEntity edited +
Event edited +
CandidateSet edited +
ReviewStatus modified +
Publication modified +
_Release modified +
CellType modified +
ReferenceGroup modified +
ModifiedNucleotide modified +
GO_BiologicalProcess modified +
Complex modified +
GroupModifiedResidue modified +
TranscriptionalModification modified +
StableIdentifierHistory modified +
PositiveGeneExpressionRegulation modified +
FunctionalStatus modified +
FragmentInsertionModification modified +
FragmentReplacedModification modified +
Polymer modified +
ReferenceSequence modified +
StableIdentifierReleaseStatus modified +
ReferenceRNASequence modified +
DrugActionType modified +
EvidenceType modified +
DatabaseObject modified +
InstanceEdit modified +
NonsenseMutation modified +
_DeletedInstance modified +
CellDevelopmentStep modified +
BlackBoxEvent modified +
ReferenceDatabase modified +
FragmentModification modified +
CandidateSet modified +
GenomeEncodedEntity modified +
PhysicalEntityCellType modified +
PositiveRegulation modified +
Figure modified +
Summation modified +
ReactionType modified +
RegulationReference modified +
Pathway modified +
GeneticallyModifiedResidue modified +
Compartment modified +
Depolymerisation modified +
ReferenceDNASequence modified +
Species modified +
Book modified +
ProteinDrug modified +
ReplacedResidue modified +
FrontPage modified +
Anatomy modified +
ControlReference modified +
MarkerReference modified +
Cell modified +
PhysicalEntity modified +
CellLineagePath modified +
StableIdentifier modified +
EntityWithAccessionedSequence modified +
DeletedControlledVocabulary modified +
DatabaseIdentifier modified +
ReferenceIsoform modified +
Reaction modified +
RetractionStatus modified +
ReferenceMolecule modified +
ModifiedResidue modified +
FailedReaction modified +
GO_CellularComponent modified +
NegativeGeneExpressionRegulation modified +
URL modified +
RNADrug modified +
FragmentDeletionModification modified +
Person modified +
EntitySet modified +
ReferenceEntity modified +
ReferenceGeneProduct modified +
TranslationalModification modified +
PathwayDiagram modified +
_Deleted modified +
DefinedSet modified +
Drug modified +
Regulation modified +
GO_MolecularFunction modified +
CatalystActivity modified +
PsiMod modified +
Disease modified +
AbstractModifiedResidue modified +
LiteratureReference modified +
InterChainCrosslinkedResidue modified +
_UpdateTracker modified +
EntityFunctionalStatus modified +
ReferenceTherapeutic modified +
Event modified +
Taxon modified +
NegativeRegulation modified +
SimpleEntity modified +
IntraChainCrosslinkedResidue modified +
OtherEntity modified +
Polymerisation modified +
Affiliation modified +
SequenceOntology modified +
InteractionEvent modified +
NegativePrecedingEventReason modified +
ExternalOntology modified +
NegativePrecedingEvent modified +
ChemicalDrug modified +
ReactionlikeEvent modified +
CatalystActivityReference modified +
FunctionalStatusType modified +
Requirement modified +
CrosslinkedResidue modified +
ControlledVocabulary modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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