Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'GenomeEncodedEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species
Taxon		 GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'GenomeEncodedEntity' instances
Class name Attribute name Cardinality
FailedReaction input +
Reaction input +
Polymerisation input +
Depolymerisation input +
ReactionlikeEvent input +
BlackBoxEvent input +
NegativeGeneExpressionRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeRegulation regulator 1
Polymerisation output +
Reaction output +
FailedReaction output +
ReactionlikeEvent output +
Depolymerisation output +
BlackBoxEvent output +
EntityFunctionalStatus normalEntity 1
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
FailedReaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
BlackBoxEvent requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
CatalystActivity physicalEntity 1
_Deleted replacementInstances +
EntityFunctionalStatus diseaseEntity 1
Complex hasComponent +
Polymer repeatedUnit +
RNADrug inferredTo +
DefinedSet inferredTo +
Cell inferredTo +
OtherEntity inferredTo +
PhysicalEntity inferredTo +
ProteinDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
ChemicalDrug inferredTo +
GenomeEncodedEntity inferredTo +
Complex inferredTo +
SimpleEntity inferredTo +
EntitySet inferredTo +
Drug inferredTo +
CandidateSet inferredTo +
Complex inferredFrom +
SimpleEntity inferredFrom +
Drug inferredFrom +
EntitySet inferredFrom +
CandidateSet inferredFrom +
GenomeEncodedEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
ChemicalDrug inferredFrom +
Polymer inferredFrom +
ProteinDrug inferredFrom +
PhysicalEntity inferredFrom +
OtherEntity inferredFrom +
Cell inferredFrom +
RNADrug inferredFrom +
DefinedSet inferredFrom +
CandidateSet hasCandidate +
InteractionEvent partners +
CandidateSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
_UpdateTracker updatedInstance 1
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

Follow Reactome