Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'GenomeEncodedEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species
Taxon		 GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'GenomeEncodedEntity' instances
Class name Attribute name Cardinality
Polymerisation input +
Reaction input +
ReactionlikeEvent input +
BlackBoxEvent input +
FailedReaction input +
Depolymerisation input +
_UpdateTracker updatedInstance 1
Reaction output +
Polymerisation output +
ReactionlikeEvent output +
BlackBoxEvent output +
FailedReaction output +
Depolymerisation output +
Regulation regulator 1
Requirement regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
CandidateSet hasCandidate +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
Depolymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
CandidateSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
EntityFunctionalStatus diseaseEntity 1
Drug inferredTo +
EntityWithAccessionedSequence inferredTo +
CandidateSet inferredTo +
EntitySet inferredTo +
Complex inferredTo +
Cell inferredTo +
ChemicalDrug inferredTo +
GenomeEncodedEntity inferredTo +
DefinedSet inferredTo +
OtherEntity inferredTo +
Polymer inferredTo +
RNADrug inferredTo +
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
ProteinDrug inferredTo +
CatalystActivity physicalEntity 1
Complex hasComponent +
_Deleted replacementInstances +
Regulation activeUnit +
Requirement activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
InteractionEvent partners +
EntityFunctionalStatus normalEntity 1
Drug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
CandidateSet inferredFrom +
Complex inferredFrom +
EntitySet inferredFrom +
Cell inferredFrom +
GenomeEncodedEntity inferredFrom +
ChemicalDrug inferredFrom +
Polymer inferredFrom +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
ProteinDrug inferredFrom +
SimpleEntity inferredFrom +
PhysicalEntity inferredFrom +
RNADrug inferredFrom +
Polymer repeatedUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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