Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'GenomeEncodedEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Taxon
Species		 GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'GenomeEncodedEntity' instances
Class name Attribute name Cardinality
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1
CandidateSet hasCandidate +
EntityFunctionalStatus diseaseEntity 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Reaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
ChemicalDrug inferredTo +
Cell inferredTo +
RNADrug inferredTo +
SimpleEntity inferredTo +
DefinedSet inferredTo +
Complex inferredTo +
PhysicalEntity inferredTo +
GenomeEncodedEntity inferredTo +
EntitySet inferredTo +
ProteinDrug inferredTo +
Drug inferredTo +
Polymer inferredTo +
CandidateSet inferredTo +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Reaction input +
ReactionlikeEvent input +
FailedReaction input +
BlackBoxEvent input +
Polymerisation input +
Depolymerisation input +
FailedReaction output +
ReactionlikeEvent output +
Reaction output +
Polymerisation output +
BlackBoxEvent output +
Depolymerisation output +
InteractionEvent partners +
_UpdateTracker updatedInstance 1
ProteinDrug inferredFrom +
Polymer inferredFrom +
Drug inferredFrom +
CandidateSet inferredFrom +
EntitySet inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
RNADrug inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
Cell inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OtherEntity inferredFrom +
ChemicalDrug inferredFrom +
EntityFunctionalStatus normalEntity 1
CandidateSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
_Deleted replacementInstances +
Complex hasComponent +
Polymer repeatedUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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