Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'GenomeEncodedEntity'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species
Taxon		 GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'GenomeEncodedEntity' instances
Class name Attribute name Cardinality
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Polymer repeatedUnit +
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Polymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
CandidateSet hasCandidate +
EntityFunctionalStatus diseaseEntity 1
InteractionEvent partners +
CatalystActivity physicalEntity 1
PhysicalEntityCellType physicalEntity 1
EntityFunctionalStatus normalEntity 1
DefinedSet inferredFrom +
ChemicalDrug inferredFrom +
EntitySet inferredFrom +
Drug inferredFrom +
Cell inferredFrom +
Polymer inferredFrom +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
RNADrug inferredFrom +
SimpleEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
ProteinDrug inferredFrom +
CandidateSet inferredFrom +
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
BlackBoxEvent output +
FailedReaction output +
ReactionlikeEvent output +
Reaction output +
Polymerisation output +
Depolymerisation output +
Complex hasComponent +
ReactionlikeEvent input +
Reaction input +
Polymerisation input +
Depolymerisation input +
FailedReaction input +
BlackBoxEvent input +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
_UpdateTracker updatedInstance 1
Cell inferredTo +
EntitySet inferredTo +
DefinedSet inferredTo +
ChemicalDrug inferredTo +
Drug inferredTo +
OtherEntity inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
RNADrug inferredTo +
EntityWithAccessionedSequence inferredTo +
SimpleEntity inferredTo +
ProteinDrug inferredTo +
Complex inferredTo +
GenomeEncodedEntity inferredTo +
CandidateSet inferredTo +
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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