Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntityWithAccessionedSequence'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
endCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasModifiedResidue + INSTANCE AbstractModifiedResidue EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceSequence EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species GenomeEncodedEntity   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
startCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntityWithAccessionedSequence' instances
Class name Attribute name Cardinality
InteractionEvent partners +
CatalystActivity physicalEntity 1
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
EntityFunctionalStatus normalEntity 1
_UpdateTracker updatedInstance 1
Polymer repeatedUnit +
EntityFunctionalStatus diseaseEntity 1
CandidateSet hasCandidate +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
Polymerisation requiredInputComponent +
Complex hasComponent +
Regulation regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Polymerisation input +
ReactionlikeEvent input +
Depolymerisation input +
FailedReaction input +
Reaction input +
BlackBoxEvent input +
ProteinDrug inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
RNADrug inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
Drug inferredFrom +
DefinedSet inferredFrom +
ChemicalDrug inferredFrom +
EntitySet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Polymer inferredFrom +
Cell inferredFrom +
CandidateSet inferredFrom +
MarkerReference marker 1
FailedReaction output +
Depolymerisation output +
ReactionlikeEvent output +
Polymerisation output +
BlackBoxEvent output +
Reaction output +
Cell proteinMarker +
Cell RNAMarker +
NegativeGeneExpressionRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
Depolymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
Drug inferredTo +
ChemicalDrug inferredTo +
DefinedSet inferredTo +
EntitySet inferredTo +
ProteinDrug inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
OtherEntity inferredTo +
RNADrug inferredTo +
Cell inferredTo +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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