Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntityWithAccessionedSequence'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
endCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasModifiedResidue + INSTANCE AbstractModifiedResidue EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceSequence EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species GenomeEncodedEntity   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
startCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntityWithAccessionedSequence' instances
Class name Attribute name Cardinality
DefinedSet inferredFrom +
CandidateSet inferredFrom +
Drug inferredFrom +
ChemicalDrug inferredFrom +
RNADrug inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
SimpleEntity inferredFrom +
Cell inferredFrom +
OtherEntity inferredFrom +
Polymer inferredFrom +
EntityWithAccessionedSequence inferredFrom +
ProteinDrug inferredFrom +
EntitySet inferredFrom +
GenomeEncodedEntity inferredFrom +
Depolymerisation input +
Reaction input +
BlackBoxEvent input +
ReactionlikeEvent input +
Polymerisation input +
FailedReaction input +
MarkerReference marker 1
Cell proteinMarker +
EntityFunctionalStatus normalEntity 1
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Complex entityOnOtherCell +
Polymer repeatedUnit +
_UpdateTracker updatedInstance 1
Polymerisation output +
FailedReaction output +
BlackBoxEvent output +
Reaction output +
Depolymerisation output +
ReactionlikeEvent output +
_Deleted replacementInstances +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
InteractionEvent partners +
CandidateSet hasCandidate +
Complex hasComponent +
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1
OtherEntity inferredTo +
Cell inferredTo +
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
Complex inferredTo +
ChemicalDrug inferredTo +
RNADrug inferredTo +
Drug inferredTo +
DefinedSet inferredTo +
CandidateSet inferredTo +
GenomeEncodedEntity inferredTo +
EntitySet inferredTo +
ProteinDrug inferredTo +
Polymer inferredTo +
EntityWithAccessionedSequence inferredTo +
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
CandidateSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
EntityFunctionalStatus diseaseEntity 1
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Cell RNAMarker +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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