Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntityWithAccessionedSequence'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
endCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasModifiedResidue + INSTANCE AbstractModifiedResidue EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceSequence EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species GenomeEncodedEntity   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
startCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntityWithAccessionedSequence' instances
Class name Attribute name Cardinality
Cell proteinMarker +
Reaction output +
Polymerisation output +
FailedReaction output +
Depolymerisation output +
BlackBoxEvent output +
ReactionlikeEvent output +
InteractionEvent partners +
FailedReaction input +
BlackBoxEvent input +
Depolymerisation input +
ReactionlikeEvent input +
Polymerisation input +
Reaction input +
_UpdateTracker updatedInstance 1
OtherEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Cell inferredFrom +
RNADrug inferredFrom +
CandidateSet inferredFrom +
ProteinDrug inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
Polymer inferredFrom +
Complex inferredFrom +
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
DefinedSet inferredFrom +
Drug inferredFrom +
ChemicalDrug inferredFrom +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
EntityFunctionalStatus normalEntity 1
MarkerReference marker 1
_Deleted replacementInstances +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
Cell RNAMarker +
NegativeGeneExpressionRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Complex hasComponent +
CandidateSet hasCandidate +
CatalystActivity physicalEntity 1
Polymer repeatedUnit +
Polymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
EntityFunctionalStatus diseaseEntity 1
ChemicalDrug inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredTo +
SimpleEntity inferredTo +
EntitySet inferredTo +
Complex inferredTo +
DefinedSet inferredTo +
Drug inferredTo +
PhysicalEntity inferredTo +
RNADrug inferredTo +
CandidateSet inferredTo +
ProteinDrug inferredTo +
OtherEntity inferredTo +
EntityWithAccessionedSequence inferredTo +
Cell inferredTo +
PositiveGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
PositiveRegulation activeUnit +
Requirement activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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