Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntitySet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntitySet' instances
Class name Attribute name Cardinality
InteractionEvent partners +
FailedReaction input +
Polymerisation input +
Reaction input +
ReactionlikeEvent input +
Depolymerisation input +
BlackBoxEvent input +
_UpdateTracker updatedInstance 1
EntityFunctionalStatus diseaseEntity 1
_Deleted replacementInstances +
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1
ProteinDrug inferredTo +
Drug inferredTo +
RNADrug inferredTo +
ChemicalDrug inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
EntitySet inferredTo +
Cell inferredTo +
DefinedSet inferredTo +
PhysicalEntity inferredTo +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation output +
BlackBoxEvent output +
Reaction output +
ReactionlikeEvent output +
FailedReaction output +
Polymerisation output +
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
CandidateSet hasCandidate +
EntityFunctionalStatus normalEntity 1
Polymer repeatedUnit +
ModifiedNucleotide modification 1
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
PositiveRegulation activeUnit +
Regulation activeUnit +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Polymer inferredFrom +
EntitySet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
DefinedSet inferredFrom +
Cell inferredFrom +
ProteinDrug inferredFrom +
Drug inferredFrom +
CandidateSet inferredFrom +
RNADrug inferredFrom +
ChemicalDrug inferredFrom +
Complex inferredFrom +
SimpleEntity inferredFrom +
Complex hasComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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