Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'EntitySet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntitySet' instances
Class name Attribute name Cardinality
DefinedSet inferredTo +
Drug inferredTo +
CandidateSet inferredTo +
GenomeEncodedEntity inferredTo +
EntitySet inferredTo +
OtherEntity inferredTo +
Complex inferredTo +
RNADrug inferredTo +
ProteinDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
Cell inferredTo +
SimpleEntity inferredTo +
PhysicalEntity inferredTo +
ChemicalDrug inferredTo +
Polymer inferredTo +
Complex hasComponent +
CandidateSet hasCandidate +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
Regulation activeUnit +
Depolymerisation entityOnOtherCell +
Polymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymer repeatedUnit +
InteractionEvent partners +
Polymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
ReactionlikeEvent output +
FailedReaction output +
BlackBoxEvent output +
Polymerisation output +
Reaction output +
Depolymerisation output +
GroupModifiedResidue modification 1
ModifiedNucleotide modification 1
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
EntityFunctionalStatus normalEntity 1
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
CatalystActivity physicalEntity 1
BlackBoxEvent input +
Polymerisation input +
Reaction input +
Depolymerisation input +
ReactionlikeEvent input +
FailedReaction input +
Cell inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex inferredFrom +
ProteinDrug inferredFrom +
RNADrug inferredFrom +
Polymer inferredFrom +
SimpleEntity inferredFrom +
PhysicalEntity inferredFrom +
ChemicalDrug inferredFrom +
DefinedSet inferredFrom +
Drug inferredFrom +
EntitySet inferredFrom +
GenomeEncodedEntity inferredFrom +
OtherEntity inferredFrom +
CandidateSet inferredFrom +
_Deleted replacementInstances +
EntityFunctionalStatus diseaseEntity 1
_UpdateTracker updatedInstance 1
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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