Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances
Class name Attribute name Cardinality
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
EntityFunctionalStatus diseaseEntity 1
Polymer repeatedUnit +
Polymerisation input +
Depolymerisation input +
FailedReaction input +
ReactionlikeEvent input +
Reaction input +
BlackBoxEvent input +
SimpleEntity inferredTo +
Complex inferredTo +
Drug inferredTo +
OtherEntity inferredTo +
CandidateSet inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
EntityWithAccessionedSequence inferredTo +
DefinedSet inferredTo +
RNADrug inferredTo +
Polymer inferredTo +
ChemicalDrug inferredTo +
GenomeEncodedEntity inferredTo +
ProteinDrug inferredTo +
Cell inferredTo +
_Deleted replacementInstances +
_UpdateTracker updatedInstance 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
Requirement regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
FailedReaction output +
Depolymerisation output +
Polymerisation output +
Reaction output +
ReactionlikeEvent output +
BlackBoxEvent output +
CandidateSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
InteractionEvent partners +
EntityFunctionalStatus normalEntity 1
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1
Polymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Depolymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
NegativeGeneExpressionRegulation activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
Regulation activeUnit +
Requirement activeUnit +
PositiveRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
PhysicalEntity inferredFrom +
Drug inferredFrom +
Complex inferredFrom +
OtherEntity inferredFrom +
ChemicalDrug inferredFrom +
Polymer inferredFrom +
EntitySet inferredFrom +
DefinedSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
RNADrug inferredFrom +
Cell inferredFrom +
GenomeEncodedEntity inferredFrom +
ProteinDrug inferredFrom +
CandidateSet hasCandidate +
GroupModifiedResidue modification 1
ModifiedNucleotide modification 1
IntraChainCrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
Complex hasComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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