Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances
Class name Attribute name Cardinality
CandidateSet hasCandidate +
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
Polymerisation input +
BlackBoxEvent input +
Reaction input +
FailedReaction input +
ReactionlikeEvent input +
Depolymerisation input +
EntityFunctionalStatus diseaseEntity 1
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1
_UpdateTracker updatedInstance 1
ProteinDrug inferredFrom +
Cell inferredFrom +
ChemicalDrug inferredFrom +
RNADrug inferredFrom +
EntitySet inferredFrom +
Drug inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OtherEntity inferredFrom +
PhysicalEntity inferredFrom +
Polymer inferredFrom +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
DefinedSet inferredFrom +
Polymer repeatedUnit +
CrosslinkedResidue modification 1
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
ModifiedNucleotide modification 1
EntityFunctionalStatus normalEntity 1
Complex hasComponent +
InteractionEvent partners +
Polymerisation output +
Reaction output +
BlackBoxEvent output +
Depolymerisation output +
FailedReaction output +
ReactionlikeEvent output +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Depolymerisation entityOnOtherCell +
CatalystActivity activeUnit +
Regulation activeUnit +
Requirement activeUnit +
NegativeRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
Requirement regulator 1
EntitySet inferredTo +
Drug inferredTo +
RNADrug inferredTo +
ChemicalDrug inferredTo +
Cell inferredTo +
ProteinDrug inferredTo +
DefinedSet inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
Complex inferredTo +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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