Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances
Class name Attribute name Cardinality
_Deleted replacementInstances +
Polymer repeatedUnit +
Regulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
ReactionlikeEvent input +
Polymerisation input +
BlackBoxEvent input +
Reaction input +
FailedReaction input +
Depolymerisation input +
EntityFunctionalStatus normalEntity 1
CatalystActivity physicalEntity 1
PhysicalEntityCellType physicalEntity 1
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
Complex entityOnOtherCell +
CandidateSet hasCandidate +
CatalystActivity activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
NegativeGeneExpressionRegulation activeUnit +
_UpdateTracker updatedInstance 1
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex inferredFrom +
GenomeEncodedEntity inferredFrom +
SimpleEntity inferredFrom +
ProteinDrug inferredFrom +
Cell inferredFrom +
EntitySet inferredFrom +
DefinedSet inferredFrom +
Polymer inferredFrom +
RNADrug inferredFrom +
ChemicalDrug inferredFrom +
OtherEntity inferredFrom +
CandidateSet inferredFrom +
Drug inferredFrom +
InteractionEvent partners +
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
ModifiedNucleotide modification 1
InterChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
Complex hasComponent +
EntityFunctionalStatus diseaseEntity 1
ReactionlikeEvent output +
BlackBoxEvent output +
Polymerisation output +
Reaction output +
FailedReaction output +
Depolymerisation output +
EntityWithAccessionedSequence inferredTo +
PhysicalEntity inferredTo +
GenomeEncodedEntity inferredTo +
Complex inferredTo +
SimpleEntity inferredTo +
Cell inferredTo +
ProteinDrug inferredTo +
DefinedSet inferredTo +
EntitySet inferredTo +
Polymer inferredTo +
RNADrug inferredTo +
OtherEntity inferredTo +
ChemicalDrug inferredTo +
CandidateSet inferredTo +
Drug inferredTo +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Polymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

Follow Reactome