Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances
Class name Attribute name Cardinality
CatalystActivity physicalEntity 1
PhysicalEntityCellType physicalEntity 1
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
Reaction output +
FailedReaction output +
ReactionlikeEvent output +
Depolymerisation output +
BlackBoxEvent output +
Polymerisation output +
Polymer repeatedUnit +
InteractionEvent partners +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Requirement activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
OtherEntity inferredTo +
RNADrug inferredTo +
ProteinDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
EntitySet inferredTo +
Complex inferredTo +
Polymer inferredTo +
Drug inferredTo +
PhysicalEntity inferredTo +
CandidateSet inferredTo +
SimpleEntity inferredTo +
ChemicalDrug inferredTo +
GenomeEncodedEntity inferredTo +
Cell inferredTo +
DefinedSet inferredTo +
_UpdateTracker updatedInstance 1
EntityFunctionalStatus diseaseEntity 1
Polymerisation input +
ReactionlikeEvent input +
Depolymerisation input +
BlackBoxEvent input +
FailedReaction input +
Reaction input +
CandidateSet hasCandidate +
_Deleted replacementInstances +
Polymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
Reaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
InterChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
CrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
ModifiedNucleotide modification 1
EntityFunctionalStatus normalEntity 1
Regulation regulator 1
PositiveRegulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
Depolymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Drug inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
CandidateSet inferredFrom +
RNADrug inferredFrom +
OtherEntity inferredFrom +
ProteinDrug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
EntitySet inferredFrom +
Complex inferredFrom +
GenomeEncodedEntity inferredFrom +
DefinedSet inferredFrom +
Cell inferredFrom +
SimpleEntity inferredFrom +
ChemicalDrug inferredFrom +
Complex hasComponent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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