Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'DefinedSet'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment EntitySet   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'DefinedSet' instances
Class name Attribute name Cardinality
OtherEntity inferredTo +
ChemicalDrug inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredTo +
DefinedSet inferredTo +
CandidateSet inferredTo +
RNADrug inferredTo +
Drug inferredTo +
SimpleEntity inferredTo +
EntitySet inferredTo +
EntityWithAccessionedSequence inferredTo +
ProteinDrug inferredTo +
Complex inferredTo +
Cell inferredTo +
PhysicalEntity inferredTo +
EntityFunctionalStatus normalEntity 1
InteractionEvent partners +
PositiveRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
Regulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Polymerisation output +
Reaction output +
Depolymerisation output +
BlackBoxEvent output +
ReactionlikeEvent output +
FailedReaction output +
CatalystActivity physicalEntity 1
CandidateSet hasCandidate +
NegativeRegulation regulator 1
Requirement regulator 1
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
EntityFunctionalStatus diseaseEntity 1
Cell inferredFrom +
Complex inferredFrom +
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
ProteinDrug inferredFrom +
SimpleEntity inferredFrom +
EntitySet inferredFrom +
Drug inferredFrom +
RNADrug inferredFrom +
CandidateSet inferredFrom +
Polymer inferredFrom +
DefinedSet inferredFrom +
ChemicalDrug inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
CandidateSet hasMember +
DefinedSet hasMember +
EntitySet hasMember +
ReactionlikeEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
GroupModifiedResidue modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
ModifiedNucleotide modification 1
Reaction input +
Polymerisation input +
BlackBoxEvent input +
Depolymerisation input +
ReactionlikeEvent input +
FailedReaction input +
Complex hasComponent +
_UpdateTracker updatedInstance 1
Polymer repeatedUnit +
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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