Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Complex'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE Compartment Complex   INTEGER(10) UNSIGNED
componentCellType + INSTANCE PhysicalEntityCellType Complex   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
entityOnOtherCell + INSTANCE PhysicalEntity Complex   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasComponent + INSTANCE PhysicalEntity Complex ALL INTEGER(10) UNSIGNED
includedLocation + INSTANCE Compartment Complex   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isChimeric 1 OTHER N/A Complex   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species Complex   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species Complex   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
stoichiometryKnown 1 OTHER N/A Complex   ENUM('TRUE','FALSE')
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'Complex' instances
Class name Attribute name Cardinality
Polymer repeatedUnit +
FailedReaction output +
Polymerisation output +
ReactionlikeEvent output +
Depolymerisation output +
BlackBoxEvent output +
Reaction output +
DefinedSet hasMember +
CandidateSet hasMember +
EntitySet hasMember +
GenomeEncodedEntity inferredFrom +
EntitySet inferredFrom +
RNADrug inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
ProteinDrug inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
CandidateSet inferredFrom +
Cell inferredFrom +
Drug inferredFrom +
ChemicalDrug inferredFrom +
Complex inferredFrom +
OtherEntity inferredFrom +
Complex hasComponent +
Reaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
Depolymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction input +
Polymerisation input +
ReactionlikeEvent input +
Depolymerisation input +
BlackBoxEvent input +
Reaction input +
PhysicalEntityCellType physicalEntity 1
CatalystActivity physicalEntity 1
EntityFunctionalStatus diseaseEntity 1
Cell proteinMarker +
_UpdateTracker updatedInstance 1
CandidateSet hasCandidate +
_Deleted replacementInstances +
EntitySet inferredTo +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
ProteinDrug inferredTo +
DefinedSet inferredTo +
SimpleEntity inferredTo +
CandidateSet inferredTo +
Cell inferredTo +
Drug inferredTo +
Polymer inferredTo +
PhysicalEntity inferredTo +
EntityWithAccessionedSequence inferredTo +
Complex inferredTo +
OtherEntity inferredTo +
ChemicalDrug inferredTo +
EntityFunctionalStatus normalEntity 1
InteractionEvent partners +
NegativeRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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