Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Cell'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
RNAMarker + INSTANCE EntityWithAccessionedSequence Cell   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
markerReference + INSTANCE MarkerReference Cell   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
organ 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
proteinMarker + INSTANCE EntityWithAccessionedSequence
Complex		 Cell   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Taxon
Species		 Cell   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
tissue 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
tissueLayer 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED

Referers of class 'Cell' instances
Class name Attribute name Cardinality
_UpdateTracker updatedInstance 1
CandidateSet inferredTo +
Cell inferredTo +
RNADrug inferredTo +
Complex inferredTo +
EntitySet inferredTo +
SimpleEntity inferredTo +
PhysicalEntity inferredTo +
Polymer inferredTo +
ProteinDrug inferredTo +
ChemicalDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
Drug inferredTo +
DefinedSet inferredTo +
EntityFunctionalStatus normalEntity 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
MarkerReference cell +
Polymer repeatedUnit +
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
CatalystActivity activeUnit +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
NegativeRegulation activeUnit +
DefinedSet inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
Drug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
ChemicalDrug inferredFrom +
ProteinDrug inferredFrom +
Polymer inferredFrom +
PhysicalEntity inferredFrom +
EntitySet inferredFrom +
SimpleEntity inferredFrom +
Complex inferredFrom +
Cell inferredFrom +
RNADrug inferredFrom +
CandidateSet inferredFrom +
EntitySet hasMember +
DefinedSet hasMember +
CandidateSet hasMember +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
Reaction entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
FailedReaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Polymerisation entityOnOtherCell +
CatalystActivity physicalEntity 1
Depolymerisation output +
BlackBoxEvent output +
Reaction output +
ReactionlikeEvent output +
CellDevelopmentStep output 1
FailedReaction output +
Polymerisation output +
_Deleted replacementInstances +
Complex hasComponent +
CellDevelopmentStep input 1
ReactionlikeEvent input +
FailedReaction input +
Polymerisation input +
Depolymerisation input +
BlackBoxEvent input +
Reaction input +
ReactionlikeEvent requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Reaction requiredInputComponent +
InteractionEvent partners +
CandidateSet hasCandidate +
EntityFunctionalStatus diseaseEntity 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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