Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Cell'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
RNAMarker + INSTANCE EntityWithAccessionedSequence Cell   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
markerReference + INSTANCE MarkerReference Cell   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
organ 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
proteinMarker + INSTANCE EntityWithAccessionedSequence
Complex		 Cell   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Taxon
Species		 Cell   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
tissue 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
tissueLayer 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED

Referers of class 'Cell' instances
Class name Attribute name Cardinality
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
FailedReaction entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Polymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
DefinedSet hasMember +
EntitySet hasMember +
CandidateSet hasMember +
EntityFunctionalStatus normalEntity 1
_Deleted replacementInstances +
ReactionlikeEvent input +
FailedReaction input +
CellDevelopmentStep input 1
Polymerisation input +
Reaction input +
Depolymerisation input +
BlackBoxEvent input +
Polymer repeatedUnit +
CandidateSet hasCandidate +
Complex hasComponent +
PositiveGeneExpressionRegulation activeUnit +
Requirement activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
NegativeGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
_UpdateTracker updatedInstance 1
OtherEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
CandidateSet inferredFrom +
Complex inferredFrom +
Drug inferredFrom +
EntitySet inferredFrom +
RNADrug inferredFrom +
ProteinDrug inferredFrom +
Cell inferredFrom +
GenomeEncodedEntity inferredFrom +
PhysicalEntity inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
ChemicalDrug inferredFrom +
Polymer inferredFrom +
FailedReaction requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
Depolymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
BlackBoxEvent requiredInputComponent +
PhysicalEntity inferredTo +
SimpleEntity inferredTo +
DefinedSet inferredTo +
ChemicalDrug inferredTo +
ProteinDrug inferredTo +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
Cell inferredTo +
Polymer inferredTo +
EntityWithAccessionedSequence inferredTo +
OtherEntity inferredTo +
EntitySet inferredTo +
CandidateSet inferredTo +
Drug inferredTo +
Complex inferredTo +
CatalystActivity physicalEntity 1
MarkerReference cell +
FailedReaction output +
ReactionlikeEvent output +
Depolymerisation output +
Polymerisation output +
Reaction output +
CellDevelopmentStep output 1
BlackBoxEvent output +
EntityFunctionalStatus diseaseEntity 1
InteractionEvent partners +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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