Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Attributes of class 'Cell'
Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
RNAMarker + INSTANCE EntityWithAccessionedSequence Cell   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType + INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
markerReference + INSTANCE MarkerReference Cell   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
organ 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
proteinMarker + INSTANCE Complex
EntityWithAccessionedSequence		 Cell   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species
Taxon		 Cell   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
tissue 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED
tissueLayer 1 INSTANCE Anatomy Cell   INTEGER(10) UNSIGNED

Referers of class 'Cell' instances
Class name Attribute name Cardinality
CatalystActivity physicalEntity 1
Polymer repeatedUnit +
ReactionlikeEvent input +
BlackBoxEvent input +
Depolymerisation input +
Reaction input +
FailedReaction input +
CellDevelopmentStep input 1
Polymerisation input +
Complex hasComponent +
_UpdateTracker updatedInstance 1
EntityFunctionalStatus diseaseEntity 1
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
CellDevelopmentStep entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation output +
CellDevelopmentStep output 1
FailedReaction output +
Reaction output +
Depolymerisation output +
ReactionlikeEvent output +
BlackBoxEvent output +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
Polymerisation requiredInputComponent +
CellDevelopmentStep requiredInputComponent +
FailedReaction requiredInputComponent +
Reaction requiredInputComponent +
CandidateSet hasMember +
EntitySet hasMember +
DefinedSet hasMember +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Regulation activeUnit +
CatalystActivity activeUnit +
Requirement activeUnit +
CandidateSet hasCandidate +
InteractionEvent partners +
EntityFunctionalStatus normalEntity 1
MarkerReference cell +
Cell inferredTo +
CandidateSet inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
SimpleEntity inferredTo +
Drug inferredTo +
ProteinDrug inferredTo +
DefinedSet inferredTo +
Polymer inferredTo +
OtherEntity inferredTo +
ChemicalDrug inferredTo +
EntityWithAccessionedSequence inferredTo +
Complex inferredTo +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
Polymer inferredFrom +
ProteinDrug inferredFrom +
DefinedSet inferredFrom +
Drug inferredFrom +
SimpleEntity inferredFrom +
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
Cell inferredFrom +
CandidateSet inferredFrom +
GenomeEncodedEntity inferredFrom +
RNADrug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
Complex inferredFrom +
ChemicalDrug inferredFrom +
OtherEntity inferredFrom +
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
_Deleted replacementInstances +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.

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