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Details on Person complex N-glycan-PALM-delta Spike S1 Fragment [endocytic vesicle membrane]

Class:Id	EntityWithAccessionedSequence:9757662
_displayName	complex N-glycan-PALM-delta Spike S1 Fragment [endocytic vesicle membrane]
_timestamp	2021-11-03 19:22:17
compartment	[Compartment:24337] endocytic vesicle membrane
created	[InstanceEdit:9757660] Gillespie, Marc E, 2021-11-03
disease	[Disease:9683912] COVID-19
endCoordinate	797
hasModifiedResidue	[ModifiedResidue:9694651] palmitoylated-L-cysteine at unknown position [GroupModifiedResidue:9696876] N4-(N-acetylamino)glucosyl-L-asparagine (high-mannose N-glycan-yl group) at 122 [GroupModifiedResidue:9696855] N4-(N-acetylamino)glucosyl-L-asparagine (high-mannose N-glycan-yl group) at 603 [GroupModifiedResidue:9696879] N4-(N-acetylamino)glucosyl-L-asparagine (high-mannose N-glycan-yl group) at 61 [GroupModifiedResidue:9696809] N4-(N-acetylamino)glucosyl-L-asparagine (high-mannose N-glycan-yl group) at 709 [GroupModifiedResidue:9696820] N4-(N-acetylamino)glucosyl-L-asparagine (high-mannose N-glycan-yl group) at 717 [GroupModifiedResidue:9696934] N4-(N-acetylamino)glucosyl-L-asparagine (Man(9) N-glycan group) at 234 [GroupModifiedResidue:9697012] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 149 [GroupModifiedResidue:9697004] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 165 [GroupModifiedResidue:9696983] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 17 [GroupModifiedResidue:9696993] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 282 [GroupModifiedResidue:9696982] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 331 [GroupModifiedResidue:9697020] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 343 [GroupModifiedResidue:9696984] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 616 [GroupModifiedResidue:9696991] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 657 [GroupModifiedResidue:9697014] N4-(N-acetylamino)glucosyl-L-asparagine (tri-antennary complex N-glycan group) at 74 [ReplacedResidue:9757659] L-threonine 19 replaced with L-arginine [ReplacedResidue:9757645] glycine 142 replaced with L-aspartic acid [ReplacedResidue:9757644] L-arginine 158 replaced with glycine [ReplacedResidue:9757670] L-leucine 452 replaced with L-arginine [ReplacedResidue:9757650] L-threonine 478 replaced with L-lysine [ReplacedResidue:9757654] L-proline 681 replaced with L-arginine [ReplacedResidue:9757672] L-valine 70 replaced with L-phenylalanine [ReplacedResidue:9757649] L-alanine 222 replaced with L-valine [ReplacedResidue:9757673] L-tryptophan 258 replaced with L-leucine [ReplacedResidue:9757668] L-lysine 417 replaced with L-asparagine [FragmentDeletionModification:9757658] Deletion of residues 156 to 157 [ReplacedResidue:9757651] L-aspartic acid 614 replaced with glycine
inferredFrom	[EntityWithAccessionedSequence:9686693] complex N-glycan-PALM-Spike S1 Fragment [endocytic vesicle membrane] [Human SARS coronavirus]
literatureReference	[LiteratureReference:9683094] Identification of N-linked carbohydrates from severe acute respiratory syndrome (SARS) spike glycoprotein [LiteratureReference:9682797] Mass spectrometric characterization of proteins from the SARS virus: a preliminary report [LiteratureReference:9683671] Proteomic analysis of SARS associated coronavirus using two-dimensional liquid chromatography mass spectrometry and one-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by mass spectroemtric analysis [LiteratureReference:9683728] Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus [LiteratureReference:9683699] Specific asparagine-linked glycosylation sites are critical for DC-SIGN- and L-SIGN-mediated severe acute respiratory syndrome coronavirus entry [LiteratureReference:9683643] The SARS coronavirus S glycoprotein receptor binding domain: fine mapping and functional characterization
name	complex N-glycan-PALM-delta Spike S1 Fragment P0DTC2
referenceEntity	[ReferenceGeneProduct:9681691] UniProt:P0DTC2 S [Severe acute respiratory syndrome coronavirus 2]
species	[Species:9681683] Severe acute respiratory syndrome coronavirus 2
stableIdentifier	[StableIdentifier:9757677] R-COV-9757662.1
startCoordinate	14
summation	[Summation:9694685] SARS-CoV-2 mRNA2 open reading frame has a length of 3,822 nt...
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No pathways have been reviewed or authored by complex N-glycan-PALM-delta Spike S1 Fragment [endocytic vesicle membrane] (9757662)