Reactome: A Curated Pathway Database
THIS SITE IS USED FOR CURATION AND TESTING
IT IS NOT STABLE, IS LINKED TO AN INCOMPLETE DATA SET, AND IS NOT MONITORED FOR PERFORMANCE. WE STRONGLY RECOMMEND THE USE OF OUR PUBLIC SITE

Query author contributions in Reactome

Reactome depends on collaboration between our curation team and outside experts to assemble and peer-review its pathway modules. The integration of ORCID within Reactome enables us to meet a key challenge with authoring, curating and reviewing biological information by incentivizing and crediting the external experts that contribute their expertise and time to the Reactome curation process. More information is available at ORCID and Reactome.

If you have an ORCID ID that is not listed on this page, please forward this information to us and we will update your Reactome pathway records.

Name Email address

Details on Person UniProt:P17405 SMPD1

Class:IdReferenceGeneProduct:50397
_chainChangeLogsignal peptide:1-46 added on Fri February 6 2015;chain:47-629 added on Fri February 6 2015;chain:254-631 for 50397 added on Fri November 4 2022
_displayNameUniProt:P17405 SMPD1
_timestamp2025-05-21 21:10:21
chainsignal peptide:1-46
chain:47-631
chain:254-631
checksumF229709F6A9B0E9E
commentFUNCTION Converts sphingomyelin to ceramide (PubMed:12563314, PubMed:1840600, PubMed:18815062, PubMed:25339683, PubMed:25920558, PubMed:27659707, PubMed:33163980). Exists as two enzymatic forms that arise from alternative trafficking of a single protein precursor, one that is targeted to the endolysosomal compartment, whereas the other is released extracellularly (PubMed:20807762, PubMed:21098024, PubMed:9660788). However, in response to various forms of stress, lysosomal exocytosis may represent a major source of the secretory form (PubMed:12563314, PubMed:20530211, PubMed:20807762, PubMed:22573858, PubMed:9393854).FUNCTION In the lysosomes, converts sphingomyelin to ceramide (PubMed:20807762, PubMed:21098024). Plays an important role in the export of cholesterol from the intraendolysosomal membranes (PubMed:25339683). Also has phospholipase C activities toward 1,2-diacylglycerolphosphocholine and 1,2-diacylglycerolphosphoglycerol (PubMed:25339683). Modulates stress-induced apoptosis through the production of ceramide (PubMed:8706124).FUNCTION When secreted, modulates cell signaling with its ability to reorganize the plasma membrane by converting sphingomyelin to ceramide (PubMed:12563314, PubMed:17303575, PubMed:20807762). Secreted form is increased in response to stress and inflammatory mediators such as IL1B, IFNG or TNF as well as upon infection with bacteria and viruses (PubMed:12563314, PubMed:20807762, PubMed:9393854). Produces the release of ceramide in the outer leaflet of the plasma membrane playing a central role in host defense (PubMed:12563314, PubMed:20807762, PubMed:9393854). Ceramide reorganizes these rafts into larger signaling platforms that are required to internalize P.aeruginosa, induce apoptosis and regulate the cytokine response in infected cells (PubMed:12563314). In wounded cells, the lysosomal form is released extracellularly in the presence of Ca(2+) and promotes endocytosis and plasma membrane repair (PubMed:20530211).FUNCTION This form is generated following cleavage by CASP7 in the extracellular milieu in response to bacterial infection (PubMed:21157428). It shows increased ability to convert sphingomyelin to ceramide and promotes plasma membrane repair (By similarity). Plasma membrane repair by ceramide counteracts the action of gasdermin-D (GSDMD) perforin (PRF1) pores that are formed in response to bacterial infection (By similarity).FUNCTION (Microbial infection) Secretion is activated by bacteria such as P.aeruginosa, N.gonorrhoeae and others, this activation results in the release of ceramide in the outer leaflet of the plasma membrane which facilitates the infection.FUNCTION (Microbial infection) Secretion is activated by human coronaviruses SARS-CoV and SARS-CoV-2 as well as Zaire ebolavirus, this activation results in the release of ceramide in the outer leaflet of the plasma membrane which facilitates the infection.FUNCTION Lacks residues that bind the cofactor Zn(2+) and has no enzyme activity.FUNCTION Lacks residues that bind the cofactor Zn(2+) and has no enzyme activity.CATALYTIC ACTIVITY a sphingomyelin + H2O = phosphocholine + an N-acylsphing-4-enine + H(+)CATALYTIC ACTIVITY N-(octadecanoyl)-sphing-4-enine-1-phosphocholine + H2O = N-octadecanoylsphing-4-enine + phosphocholine + H(+)CATALYTIC ACTIVITY 1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + H2O = 1,2-dihexadecanoyl-sn-glycerol + phosphocholine + H(+)CATALYTIC ACTIVITY a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = phosphocholine + a 1,2-diacyl-sn-glycerol + H(+)CATALYTIC ACTIVITY a sphingomyelin + H2O = phosphocholine + an N-acylsphing-4-enine + H(+)COFACTOR Binds 2 Zn(2+) ions per subunit (PubMed:27349982, PubMed:27725636).ACTIVITY REGULATION Hydrolysis of liposomal sphingomyelin is stimulated by incorporation of diacylglycerol (DAG), ceramide and free fatty acids into the liposomal membranes (PubMed:25339683). Phosphatidylcholine hydrolysis is inhibited by incorporation of cholesterol, ceramide, DAG, monoacylglycerol and fatty acids (PubMed:25339683). Antidepressants, namely amitriptyline, imipramine, desipramine, fluoxetine, sertraline, escitalopram, and maprotiline inhibit sphingomyelin phosphodiesterase activity (PubMed:22573858, PubMed:33163980).ACTIVITY REGULATION (Microbial infection) The secretory form is activated by P.aeruginosa, this activation results in the release of ceramide in the outer leaflet of the plasma membrane.ACTIVITY REGULATION (Microbial infection) The secretory form is activated by human coronavirus SARS-CoV-2, this activation results in the release of ceramide in the outer leaflet of the plasma membrane.SUBUNIT Monomer. Interacts with SORT1; the interaction is required for SMPD1 targeting to lysosomes (PubMed:16787399).INTERACTION The secreted form is induced in a time- and dose-dependent by IL1B and TNF as well as stress and viral infection. This increase of the secreted form seems to be due to exocytosis of the lysosomal form and is Ca(2+)-dependent (PubMed:20530211, PubMed:20807762, PubMed:22573858). Secretion is dependent of phosphorylation at Ser-510 (PubMed:17303575). Secretion is induced by inflammatory mediators such as IL1B, IFNG or TNF as well as infection with bacteria and viruses (PubMed:12563314, PubMed:20807762).SUBCELLULAR LOCATION This form is generated following cleavage by CASP7.ALTERNATIVE PRODUCTS Proteolytically processed (PubMed:21098024, PubMed:9030779). Mature lysosomal form arises from C-terminal proteolytic processing of pro-sphingomyelin phosphodiesterase (PubMed:21098024).PTM This form is generated following cleavage by CASP7 in the extracellular milieu (PubMed:21157428). It shows increased activity (By similarity).PTM Both lysosomal and secreted forms are glycosylated but they show a differential pattern of glycosylation.PTM Phosphorylated at Ser-510 by PRKCD upon stress stimuli. Phosphorylation is required for secretion.POLYMORPHISM A common polymorphism arises from a variable number of hexanucleotide repeat sequence within the signal peptide region.DISEASE The disease is caused by variants affecting the gene represented in this entry.DISEASE The disease is caused by variants affecting the gene represented in this entry.MISCELLANEOUS There are two types of sphingomyelinases: ASM (acid), and NSM (neutral).MISCELLANEOUS Most abundant (90%).MISCELLANEOUS Intermediate abundance (10%).MISCELLANEOUS Low abundance (<1%).SIMILARITY Belongs to the acid sphingomyelinase family.CAUTION Variants Gln-294 and Val-485 have been originally reported as disease-causing mutations in NPDA and NPDB (PubMed:12369017, PubMed:15221801). These variants have been reclassified as benign polymorphisms (PubMed:23430512).ONLINE INFORMATION Leiden Open Variation Database (LOVD)
descriptionrecommendedName: fullName evidence="66"Sphingomyelin phosphodiesterase ecNumber evidence="14 19 23 24 41 44 56"3.1.4.12 ecNumber evidence="41"3.1.4.3 alternativeName: fullName evidence="63 64 65"Acid sphingomyelinase shortName: aSMase component recommendedName: fullName evidence="66"Sphingomyelin phosphodiesterase, processed form /component
geneNameSMPD1
ASM
identifierP17405
isSequenceChangedFALSE
keyword3D-structure
Alternative splicing
Direct protein sequencing
Disease variant
Disulfide bond
Glycoprotein
Glycosidase
Host-virus interaction
Hydrolase
Lipid droplet
Lipid metabolism
Lysosome
Metal-binding
Neurodegeneration
Niemann-Pick disease
Phosphoprotein
Proteomics identification
Reference proteome
Secreted
Signal
Zinc
modified[InstanceEdit:9836292] Weiser, Joel, 2023-05-25
[InstanceEdit:9852000] Weiser, Joel, 2023-11-03
[InstanceEdit:9917590] Weiser, Joel, 2024-08-09
[InstanceEdit:9926675] Weiser, Joel, 2024-11-03
[InstanceEdit:9939033] Weiser, Joel, 2025-02-21
[InstanceEdit:9948485] Weiser, Joel, 2025-05-21
nameSMPD1
referenceDatabase[ReferenceDatabase:2] UniProt
referenceGene[ReferenceDNASequence:9003390] ENSEMBL:ENSG00000166311 SMPD1 [Homo sapiens]
secondaryIdentifierASM_HUMAN
A8K8M3
E9PKS3
P17406
Q13811
Q16837
Q16841
sequenceLength631
species[Species:48887] Homo sapiens
(isoformParent)[ReferenceIsoform:144223] UniProt:P17405-2 SMPD1 [Homo sapiens]
[ReferenceIsoform:144224] UniProt:P17405-3 SMPD1 [Homo sapiens]
[ReferenceIsoform:403084] UniProt:P17405-1 SMPD1 [Homo sapiens]
[ReferenceIsoform:8973182] UniProt:P17405-4 SMPD1 [Homo sapiens]
(referenceEntity)[EntityWithAccessionedSequence:1605710] SMPD1 [lysosomal lumen] [Homo sapiens]
[EntityWithAccessionedSequence:9769734] SMPD1 [plasma membrane] [Homo sapiens]
[Change default viewing format]
No pathways have been reviewed or authored by UniProt:P17405 SMPD1 (50397)